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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3578-RA through 18771 annotations produced 1 hits



optomotorblind (bi):

Annotation Number : CG3578
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000179
Gbrowse : chrX:4306888-4378497 (+) // 100.0 //
Probeset : 1637049_at
Accessions : protein= NP_001162662; /// NP_001162663; /// NP_525070;, nucleotide= NM_001169191; /// NM_001169192; /// NM_080331;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007472 // wing disc morphogenesis // inferred from mutant phe
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0000179.
BDGP gene expression has embryonic in situ data for bi: 18 pix of staining in 4 body parts.
Homophila reports that CG3578 is a close match (4e-32) to human gene CPX;TBX22 (NP_001103349), a gene associated with Cleft palate with ankyloglossia, 303400 (3).
BioGrid reports that CG3578 interacts with CG8495 CG8376 CG9885 CG4353 CG4637 CG4637 CG7393 CG1857 CG1857 CG4889 CG7850 CG7850 .
TRiP has 1 RNAi stocks for FBgn0000179 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 24 of 411.60Up
Head34 34 of 4 3.20Up
Eye187 84 of 417.46Up
Thoracicoabdominal ganglion43 24 of 4 4.00Up
Salivary gland23 40 of 4 2.15Up
Crop8 21 of 4 0.80None
Midgut5 10 of 4 0.50None
Tubule10 01 of 4 1.00None
Hindgut12 02 of 4 1.10None
Heart4 00 of 4 0.45Down
Fat body22 54 of 4 2.08Up
Ovary1 00 of 4 0.10Down
Testis9 03 of 4 0.90None
Male accessory glands12 40 of 4 1.20None
Virgin spermatheca15 23 of 4 1.48None
Mated spermatheca15 33 of 4 1.40None
Adult carcass24 43 of 4 2.30None
Larval CNS205 214 of 419.17Up
Larval Salivary gland13 04 of 4 1.22None
Larval midgut4 20 of 4 0.43None
Larval tubule22 14 of 4 2.10Up
Larval hindgut10 13 of 4 0.99None
Larval fat body19 23 of 4 1.80Up
Larval trachea167 114 of 415.58Up
Larval carcass25 34 of 4 2.41Up
S2 cells (growing)4 11 of 4 0.46Down
Whole fly10 13 of 4

Looking for CG3578-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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