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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3582-RA through 18771 annotations produced 1 hits



U2 small nuclear riboprotein auxiliary factor 38 (U2af38):

Annotation Number : CG3582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017457
Gbrowse : chr2L:293336-294679 (-) // 100.0 //
Probeset : 1625231_at
Accessions : protein= NP_477208;, nucleotide= NM_057860;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0017457.
BDGP gene expression has embryonic in situ data for U2af38: 4 pix of staining in 1 body parts.
BioGrid reports that CG3582 interacts with CG7971 CG9998 CG8247 .
TRiP has 1 RNAi stocks for FBgn0017457 available for purchase.
VDRC has 1 RNAi stocks for FBgn0017457 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain168 14 of 4 0.90None
Head129 24 of 4 0.70Down
Eye140 54 of 4 0.77Down
Thoracicoabdominal ganglion118 54 of 4 0.60Down
Salivary gland122 104 of 4 0.67Down
Crop139 54 of 4 0.80Down
Midgut108 24 of 4 0.60Down
Tubule98 24 of 4 0.50Down
Hindgut139 24 of 4 0.80Down
Heart79 24 of 4 0.43Down
Fat body103 144 of 4 0.56Down
Ovary347 44 of 4 1.90Up
Testis169 54 of 4 0.90None
Male accessory glands136 114 of 4 0.70Down
Virgin spermatheca74 44 of 4 0.41Down
Mated spermatheca88 74 of 4 0.48Down
Adult carcass83 34 of 4 0.50Down
Larval CNS293 274 of 4 1.61Up
Larval Salivary gland156 124 of 4 0.86None
Larval midgut82 34 of 4 0.45Down
Larval tubule116 64 of 4 0.60Down
Larval hindgut125 24 of 4 0.69Down
Larval fat body82 64 of 4 0.50Down
Larval trachea142 124 of 4 0.78Down
Larval carcass137 124 of 4 0.75Down
S2 cells (growing)229 74 of 4 1.26Up
Whole fly182 54 of 4

Looking for CG3582-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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