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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3584-RA through 18771 annotations produced 1 hits



KH domain encompassing protein 1 (qkr58E-3):

Annotation Number : CG3584
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022984
Gbrowse : chr2R:18297007-18299049 (-) // 100.0 //
Probeset : 1638133_at
Accessions : protein= NP_477306;, nucleotide= NM_057958;
Pathway : via spliceosome // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from genetic interaction /// 000
Interpro : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0022984.
BDGP gene expression has embryonic in situ data for qkr58E-3: 4 pix of staining in 1 body parts.
BioGrid reports that CG3584 interacts with CG3927 CG4167 CG5203 CG7399 .
VDRC has 2 RNAi stocks for FBgn0022984 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain389 74 of 4 1.90Up
Head261 134 of 4 1.30Up
Eye352 194 of 4 1.68Up
Thoracicoabdominal ganglion309 94 of 4 1.50Up
Salivary gland478 74 of 4 2.29Up
Crop227 104 of 4 1.10None
Midgut192 64 of 4 0.90None
Tubule111 64 of 4 0.50Down
Hindgut223 104 of 4 1.10None
Heart283 84 of 4 1.35Up
Fat body281 264 of 4 1.35Up
Ovary243 54 of 4 1.20Up
Testis285 194 of 4 1.40Up
Male accessory glands370 244 of 4 1.80Up
Virgin spermatheca188 74 of 4 0.90None
Mated spermatheca215 134 of 4 1.03None
Adult carcass183 114 of 4 0.90None
Larval CNS635 514 of 4 3.04Up
Larval Salivary gland393 124 of 4 1.88Up
Larval midgut218 64 of 4 1.05None
Larval tubule386 144 of 4 1.80Up
Larval hindgut300 134 of 4 1.44Up
Larval fat body312 74 of 4 1.50Up
Larval trachea535 274 of 4 2.56Up
Larval carcass300 344 of 4 1.44None
S2 cells (growing)329 224 of 4 1.58Up
Whole fly209 84 of 4

Looking for CG3584-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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