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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3590-RA through 18771 annotations produced 1 hits



(CG3590):

Annotation Number : CG3590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038467
Gbrowse : chr3R:12844495-12846810 (-) // 100.0 //
Probeset : 1635099_at
Accessions : protein= NP_650586;, nucleotide= NM_142329;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004018 // N6-(1
FlyMine data for FBgn0038467.
Homophila reports that CG3590 is a close match (8e-178) to human gene ADSL (NP_000017), a gene associated with Adenylosuccinase deficiency, 103050 (3).
BioGrid reports that CG3590 interacts with CG7793 CG5642 CG7375 Dmel CR31838 .
TRiP has 1 RNAi stocks for FBgn0038467 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038467 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 34 of 4 0.30Down
Head123 ± 174 of 4 1.50None
Eye123 ± 64 of 4 1.48Up
Thoracicoabdominal ganglion31 ± 34 of 4 0.40Down
Salivary gland113 ± 84 of 4 1.36Up
Crop74 ± 44 of 4 0.90None
Midgut61 ± 44 of 4 0.70Down
Tubule96 ± 24 of 4 1.20Up
Hindgut47 ± 24 of 4 0.60Down
Heart61 ± 44 of 4 0.73Down
Fat body110 ± 204 of 4 1.32None
Ovary167 ± 104 of 4 2.00Up
Testis13 ± 24 of 4 0.20Down
Male accessory glands117 ± 74 of 4 1.40Up
Virgin spermatheca246 ± 104 of 4 2.95Up
Mated spermatheca201 ± 174 of 4 2.42Up
Adult carcass70 ± 34 of 4 0.80None
Larval CNS123 ± 104 of 4 1.48Up
Larval Salivary gland111 ± 34 of 4 1.34Up
Larval midgut63 ± 84 of 4 0.76None
Larval tubule96 ± 34 of 4 1.20None
Larval hindgut76 ± 44 of 4 0.92None
Larval fat body439 ± 414 of 4 5.30Up
Larval trachea112 ± 224 of 4 1.35None
Larval carcass83 ± 124 of 4 1.00None
S2 cells (growing)53 ± 34 of 4 0.64Down
Whole fly83 ± 54 of 4

Looking for CG3590-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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