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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3593-RA through 18771 annotations produced 1 hits



UMP synthase (r-l):

Annotation Number : CG3593
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003257
Gbrowse : chr3R:16896274-16899039 (-) // 100.0 //
Probeset : 1637799_at
Accessions : protein= NP_524427;, nucleotide= NM_079703;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004588 // orotate phosphoribosyltransferase a
FlyMine data for FBgn0003257.
BDGP gene expression has embryonic in situ data for r-l: 14 pix of staining in 17 body parts.
Homophila reports that CG3593 is a close match (2e-116) to human gene UMPS;OPRT (NP_000364), a gene associated with Oroticaciduria (3).
VDRC has 2 RNAi stocks for FBgn0003257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 14 of 4 0.20Down
Head45 ± 14 of 4 0.20Down
Eye51 ± 44 of 4 0.17Down
Thoracicoabdominal ganglion59 ± 34 of 4 0.20Down
Salivary gland79 ± 114 of 4 0.27Down
Crop76 ± 64 of 4 0.30Down
Midgut57 ± 54 of 4 0.20Down
Tubule121 ± 114 of 4 0.40Down
Hindgut45 ± 24 of 4 0.20Down
Heart82 ± 74 of 4 0.28Down
Fat body72 ± 154 of 4 0.25Down
Ovary607 ± 84 of 4 2.10Up
Testis27 ± 24 of 4 0.10Down
Male accessory glands274 ± 234 of 4 0.90None
Virgin spermatheca43 ± 34 of 4 0.15Down
Mated spermatheca73 ± 64 of 4 0.25Down
Adult carcass60 ± 34 of 4 0.20Down
Larval CNS257 ± 204 of 4 0.88None
Larval Salivary gland213 ± 174 of 4 0.73Down
Larval midgut78 ± 44 of 4 0.27Down
Larval tubule61 ± 34 of 4 0.20Down
Larval hindgut98 ± 74 of 4 0.34Down
Larval fat body36 ± 44 of 4 0.10Down
Larval trachea150 ± 284 of 4 0.52Down
Larval carcass216 ± 594 of 4 0.74None
S2 cells (growing)185 ± 94 of 4 0.63Down
Whole fly292 ± 154 of 4

Looking for CG3593-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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