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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3594-RA through 18771 annotations produced 1 hits



Exu-associated protein (Eap):

Annotation Number : CG3594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035063
Gbrowse : chr2R:20668467-20669307 (+) // 100.0 //
Probeset : 1626337_at
Accessions : protein= NP_523855;, nucleotide= NM_079131;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0035063.
VDRC has 3 RNAi stocks for FBgn0035063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 14 of 4 0.60Down
Head31 ± 14 of 4 0.50Down
Eye45 ± 34 of 4 0.75None
Thoracicoabdominal ganglion27 ± 14 of 4 0.40Down
Salivary gland30 ± 90 of 4 0.50Down
Crop28 ± 24 of 4 0.50Down
Midgut25 ± 34 of 4 0.40Down
Tubule33 ± 53 of 4 0.50Down
Hindgut24 ± 04 of 4 0.40Down
Heart40 ± 54 of 4 0.66None
Fat body37 ± 94 of 4 0.61Down
Ovary101 ± 24 of 4 1.70Up
Testis9 ± 11 of 4 0.20Down
Male accessory glands130 ± 114 of 4 2.10Up
Virgin spermatheca5 ± 10 of 4 0.08Down
Mated spermatheca19 ± 20 of 4 0.32Down
Adult carcass24 ± 31 of 4 0.40Down
Larval CNS92 ± 74 of 4 1.52Up
Larval Salivary gland68 ± 34 of 4 1.14None
Larval midgut23 ± 34 of 4 0.38Down
Larval tubule16 ± 11 of 4 0.30Down
Larval hindgut38 ± 54 of 4 0.64None
Larval fat body6 ± 10 of 4 0.10Down
Larval trachea110 ± 234 of 4 1.82Up
Larval carcass51 ± 134 of 4 0.85None
S2 cells (growing)64 ± 34 of 4 1.06None
Whole fly60 ± 74 of 4

Looking for CG3594-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime