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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3595-RA through 18771 annotations produced 1 hits



myosin II (sqh):

Annotation Number : CG3595
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003514
Gbrowse : chrX:6117093-6119196 (-) // 100.0 //
Probeset : 1624065_at
Accessions : protein= NP_511057;, nucleotide= NM_078502;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035191 // nuclear axial expansion // inferred from mutant p
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation
FlyMine data for FBgn0003514.
BDGP gene expression has embryonic in situ data for sqh: 4 pix of staining in 1 body parts.
Homophila reports that CG3595 is a close match (3e-37) to human gene CMH10;MYL2 (NP_000423), a gene associated with Cardiomyopathy, familial hypertrophic, 10, 608758 (3);Cardiomyopathy, hypertrophic, mid-left ventricular chamber type, 608758 (3).
BioGrid reports that CG3595 interacts with CG7595 CG3510 CG18361 CG18361 CG17697 CG2248 CG2248 CG32555 CG32555 CG9774 .
TRiP has 4 RNAi stocks for FBgn0003514 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain598 104 of 4 1.00None
Head650 644 of 4 1.10None
Eye1570 264 of 4 2.69Up
Thoracicoabdominal ganglion451 84 of 4 0.80Down
Salivary gland1355 104 of 4 2.32Up
Crop1136 184 of 4 1.90Up
Midgut1531 374 of 4 2.60Up
Tubule707 794 of 4 1.20None
Hindgut1390 234 of 4 2.40Up
Heart798 194 of 4 1.37Up
Fat body279 364 of 4 0.48Down
Ovary460 114 of 4 0.80Down
Testis374 64 of 4 0.60Down
Male accessory glands1106 564 of 4 1.90Up
Virgin spermatheca312 134 of 4 0.53Down
Mated spermatheca400 374 of 4 0.69Down
Adult carcass489 304 of 4 0.80None
Larval CNS972 784 of 4 1.67Up
Larval Salivary gland3927 914 of 4 6.73Up
Larval midgut1661 414 of 4 2.84Up
Larval tubule1503 204 of 4 2.60Up
Larval hindgut1637 574 of 4 2.80Up
Larval fat body880 774 of 4 1.50Up
Larval trachea1994 1434 of 4 3.42Up
Larval carcass1289 1404 of 4 2.21Up
S2 cells (growing)2075 244 of 4 3.55Up
Whole fly583 284 of 4

Looking for CG3595-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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