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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3606-RB through 18771 annotations produced 1 hits



cabeza (caz):

Annotation Number : CG3606
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011571
Gbrowse : chrX:16182878-16187547 (+) // 100.0 //
Probeset : 1634362_a_at
Accessions : protein= NP_523365;, nucleotide= NM_078641;
Pathway : via spliceosome // inferred by curator /// 0006367 // transcription initiation from RNA polymerase II promoter // infer
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0011571.
BDGP gene expression has embryonic in situ data for caz: 4 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0011571 available for purchase.
VDRC has 1 RNAi stocks for FBgn0011571 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain785 54 of 4 2.00Up
Head313 94 of 4 0.80Down
Eye555 194 of 4 1.38Up
Thoracicoabdominal ganglion607 114 of 4 1.50Up
Salivary gland297 384 of 4 0.74None
Crop281 74 of 4 0.70Down
Midgut296 84 of 4 0.70Down
Tubule624 104 of 4 1.60Up
Hindgut287 54 of 4 0.70Down
Heart356 94 of 4 0.89None
Fat body231 194 of 4 0.57Down
Ovary724 124 of 4 1.80Up
Testis147 14 of 4 0.40Down
Male accessory glands167 64 of 4 0.40Down
Virgin spermatheca348 204 of 4 0.87None
Mated spermatheca457 204 of 4 1.14None
Adult carcass224 324 of 4 0.60Down
Larval CNS894 1044 of 4 2.23Up
Larval Salivary gland419 124 of 4 1.04None
Larval midgut275 64 of 4 0.68Down
Larval tubule336 114 of 4 0.80Down
Larval hindgut329 144 of 4 0.82Down
Larval fat body335 174 of 4 0.80Down
Larval trachea592 724 of 4 1.47Up
Larval carcass337 314 of 4 0.84None
S2 cells (growing)807 204 of 4 2.01Up
Whole fly402 154 of 4

Looking for CG3606-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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