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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3611-RA through 18771 annotations produced 1 hits


Annotation Number : CG3611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035069
Gbrowse : chr2R:20686320-20687085 (+) // 100.0 //
Probeset : 1638980_at
Accessions : protein= NP_611970;, nucleotide= NM_138126;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035069.
BDGP gene expression has embryonic in situ data for CG3611: 2 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0035069 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head4 20 of 4 0.40Down
Eye0 00 of 4 0.05Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland7 50 of 4 0.57None
Crop1 00 of 4 0.10Down
Midgut3 00 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut2 10 of 4 0.20Down
Heart2 10 of 4 0.15Down
Fat body1 00 of 4 0.10Down
Ovary2 10 of 4 0.20Down
Testis208 34 of 415.20Up
Male accessory glands4 20 of 4 0.30Down
Virgin spermatheca3 00 of 4 0.22Down
Mated spermatheca3 10 of 4 0.22Down
Adult carcass3 10 of 4 0.20Down
Larval CNS2 20 of 4 0.18Down
Larval Salivary gland2 10 of 4 0.18Down
Larval midgut8 20 of 4 0.58None
Larval tubule1 00 of 4 0.10Down
Larval hindgut4 10 of 4 0.30Down
Larval fat body23 101 of 4 1.70None
Larval trachea1 10 of 4 0.13Down
Larval carcass4 10 of 4 0.35Down
S2 cells (growing)2 00 of 4 0.15Down
Whole fly13 14 of 4

Looking for CG3611-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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