FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3619-RB through 18771 annotations produced 1 hits

Delta (Dl):

Annotation Number : CG3619
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000463
Gbrowse : chr3R:15130164-15151935 (-) // 100.0 //
Probeset : 1634398_a_at
Accessions : protein= NP_477264; /// NP_732412;, nucleotide= NM_057916; /// NM_169853;
Pathway : imaginal disc // traceable author statement /// 0007460 // R8 cell fate commitment // traceable author statement /// 00
Interpro : open tracheal system // non-traceable author statement /// 0035157 // negative regulation of fusion cell fate specifica
FlyMine data for FBgn0000463.
BDGP gene expression has embryonic in situ data for Dl: 55 pix of staining in 33 body parts.
Homophila reports that CG3619 is a close match (6e-12) to human gene RP39;USH2A (NP_996816), a gene associated with Retinitis pigmentosa-39, 268000 (3);Usher syndrome, type 2A, 276901 (3).
BioGrid reports that CG3619 interacts with CG8376 CG3096 CG6500 CG8365 CG10079 CG10079 CG5820 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG18803 CG18803 CG9375 CG6141 CG6779 CG6779 CG6127 CG6127 CG6127 CG6127 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG4244 CG4244 CG4244 CG4244 CG4244 CG4244 CG10393 CG4531 CG4531 CG7508 CG3411 CG18361 CG4063 CG4063 CG1007 CG1007 CG10580 CG10580 CG17697 CG3839 CG8118 CG8118 CG1560 CG11988 CG7892 CG7892 CG4444 CG31349 CG6775 CG6348 CG4125 CG17579 CG18085 CG1903 CG1903 CG11895 CG6235 CG32417 CG33101 CG33101 .
TRiP has 3 RNAi stocks for FBgn0000463 available for purchase.
VDRC has 5 RNAi stocks for FBgn0000463 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 0	4 of 4	0.20	Down
Head	33 ± 2	4 of 4	0.40	Down
Eye	33 ± 7	4 of 4	0.40	Down
Thoracicoabdominal ganglion	10 ± 1	1 of 4	0.10	Down
Salivary gland	26 ± 2	0 of 4	0.32	Down
Crop	24 ± 2	4 of 4	0.30	Down
Midgut	40 ± 1	4 of 4	0.50	Down
Tubule	17 ± 2	3 of 4	0.20	Down
Hindgut	82 ± 1	4 of 4	1.00	None
Heart	12 ± 1	2 of 4	0.14	Down
Fat body	20 ± 15	1 of 4	0.24	Down
Ovary	246 ± 6	4 of 4	2.90	Up
Testis	24 ± 1	4 of 4	0.30	Down
Male accessory glands	5 ± 1	0 of 4	0.10	Down
Virgin spermatheca	51 ± 5	4 of 4	0.61	Down
Mated spermatheca	62 ± 19	4 of 4	0.75	None
Adult carcass	28 ± 5	3 of 4	0.30	Down
Larval CNS	243 ± 34	4 of 4	2.91	Up
Larval Salivary gland	19 ± 2	4 of 4	0.24	Down
Larval midgut	26 ± 3	4 of 4	0.32	Down
Larval tubule	8 ± 1	1 of 4	0.10	Down
Larval hindgut	48 ± 1	4 of 4	0.58	Down
Larval fat body	14 ± 0	2 of 4	0.20	Down
Larval trachea	1458 ± 86	4 of 4	17.44	Up
Larval carcass	47 ± 7	4 of 4	0.57	Down
S2 cells (growing)	4 ± 1	0 of 4	0.06	Down
Whole fly	83 ± 8	4 of 4

Looking for CG3619-RB. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720