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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3622-RB through 18771 annotations produced 1 hits



stall (stl):

Annotation Number : CG3622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086408
Gbrowse : chr2R:18698896-18703508 (+) // 100.0 //
Probeset : 1634620_a_at
Accessions : protein= NP_001097423; /// NP_726248;, nucleotide= NM_001103953; /// NM_166559;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0086408.
Homophila reports that CG3622 is a close match (4e-26) to human gene ADAMTS10;WMS (NP_112219), a gene associated with Weill-Marchesani syndrome, recessive, 277600 (3).
VDRC has 2 RNAi stocks for FBgn0086408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 24 of 4 2.00Up
Head24 14 of 4 0.90None
Eye24 24 of 4 0.88None
Thoracicoabdominal ganglion28 14 of 4 1.00None
Salivary gland27 62 of 4 0.98None
Crop14 33 of 4 0.50Down
Midgut47 44 of 4 1.70Up
Tubule8 00 of 4 0.30Down
Hindgut12 13 of 4 0.50Down
Heart4 10 of 4 0.14Down
Fat body19 10 of 4 0.69Down
Ovary35 34 of 4 1.30None
Testis21 14 of 4 0.80Down
Male accessory glands28 33 of 4 1.00None
Virgin spermatheca25 14 of 4 0.93None
Mated spermatheca25 34 of 4 0.93None
Adult carcass17 60 of 4 0.60None
Larval CNS7 33 of 4 0.28Down
Larval Salivary gland13 02 of 4 0.47Down
Larval midgut16 24 of 4 0.61Down
Larval tubule6 00 of 4 0.20Down
Larval hindgut10 12 of 4 0.37Down
Larval fat body7 21 of 4 0.30Down
Larval trachea9 32 of 4 0.32Down
Larval carcass19 33 of 4 0.69None
S2 cells (growing)14 13 of 4 0.51Down
Whole fly27 14 of 4

Looking for CG3622-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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