FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3629-RB through 18771 annotations produced 2 hits

chr2R:20702352-20722125 (+) // 100.0 // (Distal-less):

Annotation Number : CG3629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625771_at
Accessions : protein= , nucleotide= NP_001137759; /// NP_523857; /// NP_726486;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG3629 is a close match (7e-11) to human gene IDG2;IGDS2;PITX2;RGS;RIEG1 (NP_700476), a gene associated with Iridogoniodysgenesis syndrome-2, 137600 (3);Rieger syndrome, 180500 (3);Ring dermoid of cornea, 180550 (3).
BioGrid reports that CG3629 interacts with CG3884 CG7417 CG4216 CG5674 CG7285 CG8266 CG10159 CG32443 CG3905 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 1	2 of 4	1.50	None
Head	11 ± 1	1 of 4	1.30	None
Eye	13 ± 1	3 of 4	1.55	Up
Thoracicoabdominal ganglion	11 ± 0	0 of 4	1.30	Up
Salivary gland	32 ± 4	1 of 4	3.65	Up
Crop	12 ± 1	0 of 4	1.30	None
Midgut	25 ± 1	4 of 4	2.80	Up
Tubule	15 ± 2	1 of 4	1.80	Up
Hindgut	14 ± 3	0 of 4	1.70	None
Heart	2 ± 1	0 of 4	0.32	Down
Fat body	13 ± 4	0 of 4	1.50	None
Ovary	5 ± 1	1 of 4	0.60	Down
Testis	5 ± 0	0 of 4	0.60	Down
Male accessory glands	8 ± 1	0 of 4	1.00	None
Virgin spermatheca	23 ± 2	2 of 4	2.61	Up
Mated spermatheca	19 ± 1	1 of 4	2.21	Up
Adult carcass	21 ± 3	1 of 4	2.40	Up
Larval CNS	13 ± 5	3 of 4	1.56	None
Larval Salivary gland	7 ± 1	0 of 4	0.88	None
Larval midgut	21 ± 2	2 of 4	2.35	Up
Larval tubule	4 ± 2	0 of 4	0.50	None
Larval hindgut	25 ± 2	3 of 4	2.86	Up
Larval fat body	13 ± 1	2 of 4	1.60	None
Larval trachea	11 ± 3	0 of 4	1.24	None
Larval carcass	25 ± 1	3 of 4	2.81	Up
S2 cells (growing)	10 ± 2	0 of 4	1.15	None
Whole fly	8 ± 0	1 of 4

chr2R:20702352-20722125 (+) // 100.0 // (Distal-less):

Annotation Number : CG3629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630237_a_at
Accessions : protein= , nucleotide= NP_001137759; /// NP_523857; /// NP_726486;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG3629 is a close match (7e-11) to human gene IDG2;IGDS2;PITX2;RGS;RIEG1 (NP_700476), a gene associated with Iridogoniodysgenesis syndrome-2, 137600 (3);Rieger syndrome, 180500 (3);Ring dermoid of cornea, 180550 (3).
BioGrid reports that CG3629 interacts with CG3884 CG7417 CG4216 CG5674 CG7285 CG8266 CG10159 CG32443 CG3905 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	86 ± 4	4 of 4	3.20	Up
Head	90 ± 6	4 of 4	3.30	Up
Eye	65 ± 2	4 of 4	2.44	Up
Thoracicoabdominal ganglion	75 ± 5	4 of 4	2.80	Up
Salivary gland	22 ± 3	0 of 4	0.83	None
Crop	11 ± 2	0 of 4	0.40	Down
Midgut	3 ± 1	0 of 4	0.10	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	5 ± 0	0 of 4	0.20	Down
Heart	2 ± 0	0 of 4	0.09	Down
Fat body	17 ± 3	0 of 4	0.66	None
Ovary	2 ± 1	0 of 4	0.10	Down
Testis	10 ± 1	3 of 4	0.40	Down
Male accessory glands	3 ± 1	0 of 4	0.10	Down
Virgin spermatheca	8 ± 2	0 of 4	0.30	Down
Mated spermatheca	15 ± 5	1 of 4	0.55	None
Adult carcass	68 ± 6	4 of 4	2.50	Up
Larval CNS	48 ± 7	4 of 4	1.80	Up
Larval Salivary gland	8 ± 3	0 of 4	0.33	Down
Larval midgut	6 ± 3	0 of 4	0.22	Down
Larval tubule	5 ± 1	0 of 4	0.20	Down
Larval hindgut	8 ± 1	0 of 4	0.31	Down
Larval fat body	6 ± 1	0 of 4	0.20	Down
Larval trachea	16 ± 7	0 of 4	0.61	None
Larval carcass	32 ± 3	1 of 4	1.20	None
S2 cells (growing)	0 ± 0	0 of 4	0.03	Down
Whole fly	27 ± 3	3 of 4

Looking for CG3629-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720