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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3632-RD through 18771 annotations produced 1 hits



MYOTUBULARIN-like (CG3632):

Annotation Number : CG3632
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030735
Gbrowse : chrX:16190746-16197351 (+) // 100.0 //
Probeset : 1641147_s_at
Accessions : protein= NP_001096996; /// NP_001096997; /// NP_001096998; /// NP_001096999;, nucleotide= NM_001103526; /// NM_001103527; /// NM_001103528; /// NM_001103529;
Interpro : 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/
FlyMine data for FBgn0030735.
BDGP gene expression has embryonic in situ data for CG3632: 4 pix of staining in 1 body parts.
Homophila reports that CG3632 is a close match (2e-37) to human gene CMT4B2;MTMR13;SBF2 (NP_112224), a gene associated with Charcot-Marie-Tooth disease, type 4B2, 604563 (3).
BioGrid reports that CG3632 interacts with CG8368 CG7146 CG7556 .
TRiP has 1 RNAi stocks for FBgn0030735 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030735 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain224 ± 124 of 4 1.50Up
Head170 ± 54 of 4 1.20Up
Eye128 ± 74 of 4 0.89None
Thoracicoabdominal ganglion242 ± 104 of 4 1.70Up
Salivary gland212 ± 74 of 4 1.46Up
Crop223 ± 24 of 4 1.50Up
Midgut201 ± 74 of 4 1.40Up
Tubule148 ± 84 of 4 1.00None
Hindgut198 ± 74 of 4 1.40Up
Heart127 ± 14 of 4 0.87Down
Fat body173 ± 104 of 4 1.19Up
Ovary234 ± 74 of 4 1.60Up
Testis39 ± 32 of 4 0.30Down
Male accessory glands136 ± 94 of 4 0.90None
Virgin spermatheca294 ± 104 of 4 2.02Up
Mated spermatheca306 ± 124 of 4 2.11Up
Adult carcass185 ± 94 of 4 1.30Up
Larval CNS152 ± 114 of 4 1.05None
Larval Salivary gland183 ± 124 of 4 1.26Up
Larval midgut261 ± 214 of 4 1.80Up
Larval tubule184 ± 64 of 4 1.30Up
Larval hindgut172 ± 84 of 4 1.19Up
Larval fat body171 ± 64 of 4 1.20Up
Larval trachea137 ± 114 of 4 0.95None
Larval carcass157 ± 154 of 4 1.09None
S2 cells (growing)187 ± 34 of 4 1.29Up
Whole fly145 ± 64 of 4

Looking for CG3632-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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