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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3635-RA through 18771 annotations produced 1 hits



(CG3635):

Annotation Number : CG3635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032981
Gbrowse : chr2L:22182737-22183923 (+) // 100.0 //
Probeset : 1640207_at
Accessions : protein= NP_610138;, nucleotide= NM_136294;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0032981.
Homophila reports that CG3635 is a close match (7e-39) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 3 RNAi stocks for FBgn0032981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head6 ± 00 of 4 0.60Down
Eye0 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland11 ± 50 of 4 1.02None
Crop2 ± 10 of 4 0.20Down
Midgut104 ± 54 of 4 9.60Up
Tubule3 ± 00 of 4 0.40Down
Hindgut14 ± 14 of 4 1.40Up
Heart1 ± 00 of 4 0.15Down
Fat body4 ± 20 of 4 0.41Down
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.30Down
Male accessory glands3 ± 30 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.15Down
Mated spermatheca1 ± 00 of 4 0.11Down
Adult carcass4 ± 20 of 4 0.40None
Larval CNS1 ± 10 of 4 0.15Down
Larval Salivary gland1 ± 00 of 4 0.10Down
Larval midgut10 ± 51 of 4 0.98None
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut3 ± 10 of 4 0.29Down
Larval fat body4 ± 20 of 4 0.40None
Larval trachea2 ± 10 of 4 0.21Down
Larval carcass1 ± 10 of 4 0.17Down
S2 cells (growing)155 ± 34 of 414.35Up
Whole fly10 ± 01 of 4

Looking for CG3635-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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