Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3637-RA through 18771 annotations produced 1 hits



cortactin (Cortactin):

Annotation Number : CG3637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025865
Gbrowse : chr3R:16887401-16890185 (-) // 100.0 //
Probeset : 1640871_at
Accessions : protein= NP_524426;, nucleotide= NM_079702;
Pathway : 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred fr
Interpro : 0070064 // proline-rich region binding // inferred from genetic interaction
FlyMine data for FBgn0025865.
BDGP gene expression has embryonic in situ data for Cortactin: 13 pix of staining in 25 body parts.
TRiP has 2 RNAi stocks for FBgn0025865 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025865 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 ± 64 of 4 1.30Up
Head110 ± 54 of 4 0.80Down
Eye81 ± 34 of 4 0.60Down
Thoracicoabdominal ganglion159 ± 24 of 4 1.20Up
Salivary gland62 ± 34 of 4 0.46Down
Crop139 ± 44 of 4 1.00None
Midgut367 ± 94 of 4 2.70Up
Tubule221 ± 24 of 4 1.60Up
Hindgut125 ± 24 of 4 0.90None
Heart96 ± 44 of 4 0.71Down
Fat body73 ± 124 of 4 0.54Down
Ovary250 ± 54 of 4 1.80Up
Testis146 ± 64 of 4 1.10None
Male accessory glands52 ± 44 of 4 0.40Down
Virgin spermatheca55 ± 34 of 4 0.41Down
Mated spermatheca69 ± 44 of 4 0.51Down
Adult carcass68 ± 54 of 4 0.50Down
Larval CNS301 ± 294 of 4 2.22Up
Larval Salivary gland126 ± 64 of 4 0.93None
Larval midgut928 ± 254 of 4 6.84Up
Larval tubule314 ± 154 of 4 2.30Up
Larval hindgut431 ± 94 of 4 3.18Up
Larval fat body242 ± 104 of 4 1.80Up
Larval trachea261 ± 254 of 4 1.92Up
Larval carcass272 ± 154 of 4 2.01Up
S2 cells (growing)660 ± 284 of 4 4.86Up
Whole fly135 ± 54 of 4

Looking for CG3637-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime