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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3641-RB through 18771 annotations produced 1 hits



(CG33331):

Annotation Number : CG3641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0067628
Gbrowse : chr3R:10712197-10713332 (+) // 100.0 //
Probeset : 1629725_at
Accessions : protein= NP_996213;, nucleotide= NM_206491;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0031314 // extrinsic to mitochondrial inner membrane
FlyMine data for FBgn0067628.
VDRC has 2 RNAi stocks for FBgn0067628 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 14 of 4 1.10None
Head25 24 of 4 0.50Down
Eye14 23 of 4 0.32Down
Thoracicoabdominal ganglion59 34 of 4 1.30Up
Salivary gland25 33 of 4 0.54Down
Crop20 14 of 4 0.40Down
Midgut35 14 of 4 0.80Down
Tubule41 14 of 4 0.90Down
Hindgut24 14 of 4 0.50Down
Heart16 14 of 4 0.36Down
Fat body34 04 of 4 0.74Down
Ovary115 14 of 4 2.50Up
Testis16 04 of 4 0.40Down
Male accessory glands26 44 of 4 0.60Down
Virgin spermatheca35 14 of 4 0.76Down
Mated spermatheca27 13 of 4 0.58Down
Adult carcass25 33 of 4 0.50Down
Larval CNS45 14 of 4 0.98None
Larval Salivary gland49 34 of 4 1.05None
Larval midgut27 14 of 4 0.58Down
Larval tubule42 34 of 4 0.90None
Larval hindgut37 24 of 4 0.81None
Larval fat body29 14 of 4 0.60Down
Larval trachea48 44 of 4 1.04None
Larval carcass37 24 of 4 0.80None
S2 cells (growing)41 24 of 4 0.89None
Whole fly46 34 of 4

Looking for CG3641-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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