FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3642-RA through 18771 annotations produced 1 hits

Clipper (Clp):

Annotation Number : CG3642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015621
Gbrowse : chr2L:819963-821209 (+) // 100.0 //
Probeset : 1631116_at
Accessions : protein= NP_477156;, nucleotide= NM_057808;
Pathway : 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from sequence or structural similari
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004521 // endoribonuclease activity // infer
FlyMine data for FBgn0015621.
BioGrid reports that CG3642 interacts with Dmel CG34168 CG8793 CG5643 CG6835 CG7041 CG7361 CG8942 CG9031 .
TRiP has 1 RNAi stocks for FBgn0015621 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015621 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	59 ± 3	4 of 4	0.40	Down
Head	45 ± 3	4 of 4	0.30	Down
Eye	38 ± 2	4 of 4	0.27	Down
Thoracicoabdominal ganglion	53 ± 4	4 of 4	0.40	Down
Salivary gland	54 ± 5	4 of 4	0.38	Down
Crop	54 ± 4	4 of 4	0.40	Down
Midgut	55 ± 1	4 of 4	0.40	Down
Tubule	39 ± 5	4 of 4	0.30	Down
Hindgut	50 ± 2	4 of 4	0.30	Down
Heart	41 ± 4	4 of 4	0.29	Down
Fat body	40 ± 4	4 of 4	0.28	Down
Ovary	307 ± 2	4 of 4	2.10	Up
Testis	52 ± 1	4 of 4	0.40	Down
Male accessory glands	89 ± 10	4 of 4	0.60	Down
Virgin spermatheca	67 ± 2	4 of 4	0.47	Down
Mated spermatheca	71 ± 5	4 of 4	0.50	Down
Adult carcass	47 ± 5	4 of 4	0.30	Down
Larval CNS	151 ± 3	4 of 4	1.05	None
Larval Salivary gland	105 ± 8	4 of 4	0.73	Down
Larval midgut	48 ± 3	4 of 4	0.34	Down
Larval tubule	68 ± 1	4 of 4	0.50	Down
Larval hindgut	60 ± 2	4 of 4	0.42	Down
Larval fat body	54 ± 2	4 of 4	0.40	Down
Larval trachea	115 ± 9	4 of 4	0.80	Down
Larval carcass	57 ± 3	4 of 4	0.40	Down
S2 cells (growing)	159 ± 2	4 of 4	1.11	None
Whole fly	144 ± 6	4 of 4

Looking for CG3642-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720