FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3644-RA through 18771 annotations produced 1 hits

Enhancer of Bicaudal (bic):

Annotation Number : CG3644
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000181
Gbrowse : chr2R:8757741-8759608 (+) // 100.0 //
Probeset : 1627623_s_at
Accessions : protein= NP_476853; /// NP_725235;, nucleotide= NM_057505; /// NM_165954;
Pathway : 0005854 // nascent polypeptide-associated complex // non-traceable author statement /// 0005875 // microtubule associate
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0000181.
BDGP gene expression has embryonic in situ data for bic: 22 pix of staining in 7 body parts.
BioGrid reports that CG3644 interacts with CG5156 CG6117 CG8759 CG5144 CG5168 CG7041 CG7066 CG8725 CG9520 CG9610 CG4824 CG6605 .
TRiP has 1 RNAi stocks for FBgn0000181 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000181 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	146 ± 3	4 of 4	2.30	Up
Head	94 ± 5	4 of 4	1.50	Up
Eye	216 ± 11	4 of 4	3.45	Up
Thoracicoabdominal ganglion	90 ± 4	4 of 4	1.40	Up
Salivary gland	199 ± 6	4 of 4	3.18	Up
Crop	63 ± 3	4 of 4	1.00	None
Midgut	55 ± 2	4 of 4	0.90	None
Tubule	76 ± 4	4 of 4	1.20	Up
Hindgut	48 ± 1	4 of 4	0.80	Down
Heart	86 ± 2	4 of 4	1.38	Up
Fat body	75 ± 10	4 of 4	1.21	None
Ovary	55 ± 2	4 of 4	0.90	None
Testis	57 ± 4	4 of 4	0.90	None
Male accessory glands	408 ± 21	4 of 4	6.50	Up
Virgin spermatheca	122 ± 3	4 of 4	1.95	Up
Mated spermatheca	103 ± 5	4 of 4	1.64	Up
Adult carcass	81 ± 3	4 of 4	1.30	Up
Larval CNS	105 ± 16	4 of 4	1.68	Up
Larval Salivary gland	143 ± 15	4 of 4	2.28	Up
Larval midgut	48 ± 2	4 of 4	0.78	Down
Larval tubule	55 ± 3	4 of 4	0.90	None
Larval hindgut	58 ± 3	4 of 4	0.93	None
Larval fat body	73 ± 6	4 of 4	1.20	None
Larval trachea	119 ± 4	4 of 4	1.91	Up
Larval carcass	72 ± 4	4 of 4	1.16	None
S2 cells (growing)	44 ± 2	4 of 4	0.70	Down
Whole fly	62 ± 3	4 of 4

Looking for CG3644-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720