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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3647-RB through 18771 annotations produced 1 hits



Chorion-factor-4 (stc):

Annotation Number : CG3647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001978
Gbrowse : chr2L:15113481-15118070 (+) // 100.0 //
Probeset : 1640237_a_at
Accessions : protein= NP_476598; /// NP_476599;, nucleotide= NM_057250; /// NM_057251;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
FlyMine data for FBgn0001978.
BioGrid reports that CG3647 interacts with CG3820 CG4453 CG4818 CG7360 CG8426 .
VDRC has 2 RNAi stocks for FBgn0001978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain194 34 of 4 0.70Down
Head116 34 of 4 0.40Down
Eye107 24 of 4 0.38Down
Thoracicoabdominal ganglion168 84 of 4 0.60Down
Salivary gland242 114 of 4 0.87None
Crop180 54 of 4 0.60Down
Midgut218 234 of 4 0.80None
Tubule212 134 of 4 0.80Down
Hindgut148 14 of 4 0.50Down
Heart92 24 of 4 0.33Down
Fat body171 304 of 4 0.61Down
Ovary544 84 of 4 1.90Up
Testis339 184 of 4 1.20None
Male accessory glands617 144 of 4 2.20Up
Virgin spermatheca246 104 of 4 0.88None
Mated spermatheca294 74 of 4 1.05None
Adult carcass106 104 of 4 0.40Down
Larval CNS235 164 of 4 0.84None
Larval Salivary gland394 104 of 4 1.41Up
Larval midgut199 204 of 4 0.71Down
Larval tubule131 24 of 4 0.50Down
Larval hindgut158 64 of 4 0.57Down
Larval fat body140 214 of 4 0.50Down
Larval trachea171 134 of 4 0.61Down
Larval carcass235 194 of 4 0.84None
S2 cells (growing)216 144 of 4 0.77Down
Whole fly279 164 of 4

Looking for CG3647-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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