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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3649-RA through 18771 annotations produced 1 hits



(CG3649):

Annotation Number : CG3649
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034785
Gbrowse : chr2R:18733640-18735366 (+) // 100.0 //
Probeset : 1640390_at
Accessions : protein= NP_611725;, nucleotide= NM_137881;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0034785.
Homophila reports that CG3649 is a close match (2e-38) to human gene SIASD;SLC17A5;SLD (NP_036566), a gene associated with Salla disease, 604369 (3);Sialic acid storage disorder, infantile, 269920 (3).
VDRC has 3 RNAi stocks for FBgn0034785 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head5 10 of 4 0.50Down
Eye2 10 of 4 0.18Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland13 21 of 4 1.20None
Crop2 10 of 4 0.20Down
Midgut5 21 of 4 0.50None
Tubule4 00 of 4 0.40Down
Hindgut4 10 of 4 0.40Down
Heart4 11 of 4 0.35Down
Fat body8 21 of 4 0.73None
Ovary2 10 of 4 0.20Down
Testis3 00 of 4 0.30Down
Male accessory glands7 30 of 4 0.70None
Virgin spermatheca13 23 of 4 1.17None
Mated spermatheca13 04 of 4 1.16None
Adult carcass11 20 of 4 1.00None
Larval CNS4 02 of 4 0.42Down
Larval Salivary gland3 11 of 4 0.27Down
Larval midgut4 11 of 4 0.39Down
Larval tubule5 01 of 4 0.50Down
Larval hindgut2 00 of 4 0.23Down
Larval fat body6 20 of 4 0.60None
Larval trachea1 10 of 4 0.17Down
Larval carcass4 10 of 4 0.41Down
S2 cells (growing)4 01 of 4 0.35Down
Whole fly11 04 of 4

Looking for CG3649-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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