FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3653-RB through 18771 annotations produced 2 hits

dumbfounded (kirre):

Annotation Number : CR_tc_LD23922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028369
Gbrowse : chrX:2756792-2993900 (+) // 100.0 //
Probeset : 1633514_at
Accessions : protein= NP_525059; /// NP_726844;, nucleotide= NM_080320; /// NM_166958;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028369.
VDRC has 5 RNAi stocks for FBgn0028369 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.60	None
Head	4 ± 1	0 of 4	1.70	None
Eye	6 ± 0	0 of 4	2.88	Up
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.70	None
Salivary gland	6 ± 2	0 of 4	2.58	None
Crop	2 ± 0	0 of 4	1.00	None
Midgut	1 ± 0	0 of 4	0.50	None
Tubule	1 ± 0	0 of 4	0.60	Down
Hindgut	5 ± 2	0 of 4	2.20	None
Heart	1 ± 0	0 of 4	0.68	None
Fat body	3 ± 2	0 of 4	1.35	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	0 ± 0	0 of 4	0.30	None
Male accessory glands	1 ± 0	0 of 4	0.50	None
Virgin spermatheca	1 ± 0	0 of 4	0.68	None
Mated spermatheca	3 ± 1	0 of 4	1.41	None
Adult carcass	9 ± 1	0 of 4	3.90	Up
Larval CNS	4 ± 3	0 of 4	1.68	None
Larval Salivary gland	1 ± 0	0 of 4	0.48	None
Larval midgut	1 ± 0	0 of 4	0.40	None
Larval tubule	2 ± 0	0 of 4	0.90	None
Larval hindgut	0 ± 0	0 of 4	0.29	None
Larval fat body	2 ± 0	0 of 4	1.20	None
Larval trachea	1 ± 0	0 of 4	0.53	None
Larval carcass	2 ± 0	0 of 4	0.96	None
S2 cells (growing)	2 ± 1	0 of 4	1.04	None
Whole fly	2 ± 1	0 of 4

dumbfounded (kirre):

Annotation Number : CG3653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028369
Gbrowse : chrX:2994110-3026824 (+) // 99.66 //
Probeset : 1633888_s_at
Accessions : protein= NP_525059; /// NP_726844;, nucleotide= NM_080320; /// NM_166958;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028369.
Homophila reports that CG3653 is a close match (1e-14) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
BioGrid reports that CG3653 interacts with CG32096 .
VDRC has 5 RNAi stocks for FBgn0028369 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	121 ± 6	4 of 4	8.20	Up
Head	34 ± 3	4 of 4	2.40	Up
Eye	137 ± 15	4 of 4	9.32	Up
Thoracicoabdominal ganglion	93 ± 3	4 of 4	6.40	Up
Salivary gland	22 ± 5	1 of 4	1.52	None
Crop	19 ± 2	4 of 4	1.30	None
Midgut	6 ± 2	0 of 4	0.40	Down
Tubule	5 ± 1	0 of 4	0.40	Down
Hindgut	11 ± 1	1 of 4	0.80	None
Heart	316 ± 17	4 of 4	21.45	Up
Fat body	26 ± 7	3 of 4	1.76	None
Ovary	11 ± 1	1 of 4	0.80	None
Testis	12 ± 1	3 of 4	0.80	None
Male accessory glands	3 ± 0	0 of 4	0.20	Down
Virgin spermatheca	16 ± 3	3 of 4	1.14	None
Mated spermatheca	14 ± 1	1 of 4	0.95	None
Adult carcass	14 ± 2	0 of 4	1.00	None
Larval CNS	56 ± 8	4 of 4	3.83	Up
Larval Salivary gland	10 ± 2	0 of 4	0.72	None
Larval midgut	11 ± 3	0 of 4	0.74	None
Larval tubule	5 ± 2	0 of 4	0.40	Down
Larval hindgut	6 ± 1	0 of 4	0.43	Down
Larval fat body	9 ± 4	0 of 4	0.60	None
Larval trachea	136 ± 12	4 of 4	9.22	Up
Larval carcass	13 ± 3	0 of 4	0.92	None
S2 cells (growing)	18 ± 1	0 of 4	1.26	Up
Whole fly	14 ± 0	1 of 4

Looking for CG3653-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720