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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3654-RD through 18771 annotations produced 1 hits



CG3654 (Jarid2):

Annotation Number : CG3654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036004
Gbrowse : chr3L:9470149-9479632 (+) // 100.0 //
Probeset : 1634092_at
Accessions : protein= NP_648324;, nucleotide= NM_140067;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0036004.
BDGP gene expression has embryonic in situ data for CG3654: 4 pix of staining in 1 body parts.
Homophila reports that CG3654 is a close match (4e-28) to human gene DXS1272E;JARID1C;MRXSJ;SMCX;XE169 (NP_004178), a gene associated with Mental retardation, X-linked, syndromic, JARID1C-related, 300534 (3).
BioGrid reports that CG3654 interacts with CG8229 .
TRiP has 3 RNAi stocks for FBgn0036004 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036004 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain307 ± 74 of 4 2.10Up
Head114 ± 24 of 4 0.80None
Eye250 ± 144 of 4 1.67Up
Thoracicoabdominal ganglion209 ± 124 of 4 1.40Up
Salivary gland313 ± 344 of 4 2.09Up
Crop152 ± 84 of 4 1.00None
Midgut115 ± 24 of 4 0.80None
Tubule227 ± 64 of 4 1.50Up
Hindgut146 ± 54 of 4 1.00None
Heart196 ± 114 of 4 1.31Up
Fat body144 ± 214 of 4 0.97None
Ovary595 ± 104 of 4 4.00Up
Testis32 ± 24 of 4 0.20Down
Male accessory glands225 ± 74 of 4 1.50Up
Virgin spermatheca167 ± 34 of 4 1.12None
Mated spermatheca166 ± 124 of 4 1.11None
Adult carcass143 ± 104 of 4 1.00None
Larval CNS299 ± 234 of 4 2.00Up
Larval Salivary gland436 ± 124 of 4 2.91Up
Larval midgut142 ± 54 of 4 0.95None
Larval tubule158 ± 64 of 4 1.10None
Larval hindgut214 ± 54 of 4 1.43Up
Larval fat body101 ± 144 of 4 0.70None
Larval trachea391 ± 384 of 4 2.62Up
Larval carcass200 ± 124 of 4 1.34Up
S2 cells (growing)244 ± 194 of 4 1.63Up
Whole fly149 ± 144 of 4

Looking for CG3654-RD. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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