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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3656-RB through 18771 annotations produced 1 hits


Cytochrome P450 4D1 (Cyp4d1):

Annotation Number : CG3656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005670
Gbrowse : chrX:2053174-2056160 (-) // 100.0 //
Probeset : 1629875_a_at
Accessions : protein= NP_476907; /// NP_726797;, nucleotide= NM_057559; /// NM_166932;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0005670.
BDGP gene expression has embryonic in situ data for Cyp4d1: 8 pix of staining in 1 body parts.
Homophila reports that CG3656 is a close match (9e-11) to human gene CYP11B1;FHI;P450C11 (NP_000488), a gene associated with Adrenal hyperplasia, congenital, due to 11-beta-hydroxylase deficiency, 202010 (3);Aldosteronism, glucocorticoid-remediable, 103900 (3).
VDRC has 2 RNAi stocks for FBgn0005670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head112 ± 84 of 4 1.60None
Eye95 ± 204 of 4 1.32None
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.03Down
Crop1 ± 00 of 4 0.00Down
Midgut865 ± 484 of 412.00Up
Tubule1 ± 00 of 4 0.00Down
Hindgut4 ± 20 of 4 0.10Down
Heart153 ± 264 of 4 2.13Up
Fat body302 ± 684 of 4 4.18Up
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca284 ± 304 of 4 3.93Up
Mated spermatheca329 ± 44 of 4 4.56Up
Adult carcass99 ± 154 of 4 1.40None
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland120 ± 64 of 4 1.67Up
Larval midgut1114 ± 814 of 415.42Up
Larval tubule13 ± 30 of 4 0.20Down
Larval hindgut121 ± 204 of 4 1.68None
Larval fat body4712 ± 6574 of 465.20Up
Larval trachea38 ± 292 of 4 0.53None
Larval carcass25 ± 80 of 4 0.35Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly72 ± 144 of 4

Looking for CG3656-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime