FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3658-RA through 18771 annotations produced 1 hits

Transcription unit D (CDC45L):

Annotation Number : CG3658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026143
Gbrowse : chrX:922323-924606 (-) // 99.82 //
Probeset : 1632288_at
Accessions : protein= NP_569880;, nucleotide= NM_130524;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005656 // pre-replicative complex // inferred from physical intera
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // inferred f
FlyMine data for FBgn0026143.
BioGrid reports that CG3658 interacts with CG5792 CG4082 CG1616 .
VDRC has 3 RNAi stocks for FBgn0026143 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	63 ± 3	4 of 4	0.30	Down
Head	41 ± 3	4 of 4	0.20	Down
Eye	46 ± 3	4 of 4	0.23	Down
Thoracicoabdominal ganglion	56 ± 4	4 of 4	0.30	Down
Salivary gland	63 ± 7	4 of 4	0.31	Down
Crop	29 ± 1	4 of 4	0.10	Down
Midgut	38 ± 3	4 of 4	0.20	Down
Tubule	36 ± 3	4 of 4	0.20	Down
Hindgut	28 ± 2	4 of 4	0.10	Down
Heart	41 ± 0	4 of 4	0.20	Down
Fat body	35 ± 4	4 of 4	0.17	Down
Ovary	424 ± 4	4 of 4	2.10	Up
Testis	25 ± 0	4 of 4	0.10	Down
Male accessory glands	43 ± 3	4 of 4	0.20	Down
Virgin spermatheca	31 ± 2	4 of 4	0.16	Down
Mated spermatheca	37 ± 2	4 of 4	0.18	Down
Adult carcass	48 ± 3	4 of 4	0.20	Down
Larval CNS	156 ± 14	4 of 4	0.77	Down
Larval Salivary gland	161 ± 6	4 of 4	0.80	None
Larval midgut	28 ± 1	4 of 4	0.14	Down
Larval tubule	19 ± 1	3 of 4	0.10	Down
Larval hindgut	54 ± 1	4 of 4	0.27	Down
Larval fat body	24 ± 3	3 of 4	0.10	Down
Larval trachea	127 ± 12	4 of 4	0.63	Down
Larval carcass	77 ± 8	4 of 4	0.38	Down
S2 cells (growing)	91 ± 3	4 of 4	0.45	Down
Whole fly	202 ± 13	4 of 4

Looking for CG3658-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720