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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3665-RB through 18771 annotations produced 2 hits



Fasciclin II (Fas2):

Annotation Number : CG3665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000635
Gbrowse : chrX:4033085-4100123 (-) // 100.0 //
Probeset : 1630160_at
Accessions : protein= NP_525066; /// NP_726911; /// NP_726912;, nucleotide= NM_080327; /// NM_167004; /// NM_167005;
Pathway : open tracheal system // traceable author statement /// 0035158 // regulation of tube diameter
Interpro : open tracheal system // inferred from mutant phenotype /// 0035159 // regulation of tube length
FlyMine data for FBgn0000635.
Homophila reports that CG3665 is a close match (2e-11) to human gene KIAA0992;PALLD;PNCA1 (NP_057165), a gene associated with {Pancreatic cancer, susceptibility to, 1}, 606856 (3).
BioGrid reports that CG3665 interacts with CG7503 CG1705 CG18405 CG18405 CG4700 CG4700 CG4846 CG4846 CG1560 CG11081 CG5406 CG5406 .
TRiP has 2 RNAi stocks for FBgn0000635 available for purchase.
VDRC has 5 RNAi stocks for FBgn0000635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 34 of 4 1.60Up
Head67 54 of 4 0.80None
Eye154 74 of 4 1.96Up
Thoracicoabdominal ganglion198 114 of 4 2.50Up
Salivary gland121 104 of 4 1.53Up
Crop57 54 of 4 0.70None
Midgut49 33 of 4 0.60Down
Tubule1676 534 of 421.20Up
Hindgut78 74 of 4 1.00None
Heart84 104 of 4 1.07None
Fat body55 194 of 4 0.70None
Ovary5 01 of 4 0.10Down
Testis9 12 of 4 0.10Down
Male accessory glands53 84 of 4 0.70None
Virgin spermatheca47 44 of 4 0.61Down
Mated spermatheca67 134 of 4 0.86None
Adult carcass82 74 of 4 1.00None
Larval CNS49 34 of 4 0.63Down
Larval Salivary gland32 30 of 4 0.41Down
Larval midgut32 20 of 4 0.41Down
Larval tubule305 264 of 4 3.90Up
Larval hindgut54 34 of 4 0.69None
Larval fat body26 41 of 4 0.30Down
Larval trachea103 144 of 4 1.31None
Larval carcass38 24 of 4 0.49Down
S2 cells (growing)8 21 of 4 0.11Down
Whole fly79 84 of 4



Fasciclin II (Fas2):

Annotation Number : CG3665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000635
Gbrowse : chrX:4033085-4100123 (-) // 100.0 //
Probeset : 1624774_a_at
Accessions : protein= NP_525066; /// NP_726911; /// NP_726912;, nucleotide= NM_080327; /// NM_167004; /// NM_167005;
Pathway : open tracheal system // traceable author statement /// 0035158 // regulation of tube diameter
Interpro : open tracheal system // inferred from mutant phenotype /// 0035159 // regulation of tube length
FlyMine data for FBgn0000635.
Homophila reports that CG3665 is a close match (2e-11) to human gene KIAA0992;PALLD;PNCA1 (NP_057165), a gene associated with {Pancreatic cancer, susceptibility to, 1}, 606856 (3).
BioGrid reports that CG3665 interacts with CG7503 CG1705 CG18405 CG18405 CG4700 CG4700 CG4846 CG4846 CG1560 CG11081 CG5406 CG5406 .
TRiP has 2 RNAi stocks for FBgn0000635 available for purchase.
VDRC has 5 RNAi stocks for FBgn0000635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 34 of 4 3.80Up
Head114 54 of 4 2.20Up
Eye169 64 of 4 3.29Up
Thoracicoabdominal ganglion340 174 of 4 6.60Up
Salivary gland73 74 of 4 1.43None
Crop81 24 of 4 1.60Up
Midgut35 34 of 4 0.70Down
Tubule813 304 of 415.80Up
Hindgut79 44 of 4 1.50Up
Heart37 14 of 4 0.73Down
Fat body33 64 of 4 0.66Down
Ovary19 14 of 4 0.40Down
Testis20 14 of 4 0.40Down
Male accessory glands38 34 of 4 0.80Down
Virgin spermatheca38 04 of 4 0.75Down
Mated spermatheca58 104 of 4 1.14None
Adult carcass92 44 of 4 1.80Up
Larval CNS235 244 of 4 4.59Up
Larval Salivary gland94 24 of 4 1.84Up
Larval midgut31 44 of 4 0.61Down
Larval tubule102 74 of 4 2.00Up
Larval hindgut105 44 of 4 2.06Up
Larval fat body52 94 of 4 1.00None
Larval trachea316 174 of 4 6.16Up
Larval carcass90 24 of 4 1.76Up
S2 cells (growing)40 14 of 4 0.80Down
Whole fly51 14 of 4

Looking for CG3665-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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