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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3666-RA through 18771 annotations produced 1 hits



Transferrin 3 (Tsf3):

Annotation Number : CG3666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034094
Gbrowse : chr2R:12114030-12117379 (+) // 100.0 //
Probeset : 1633017_at
Accessions : protein= NP_523759;, nucleotide= NM_079035;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005381 // iron ion transmembrane transporter activity // non-traceable author statement /// 0008199 // ferric iron bind
FlyMine data for FBgn0034094.
Homophila reports that CG3666 is a close match (5e-21) to human gene TF (NP_001054), a gene associated with Atransferrinemia, 209300 (3);{Iron deficiency anemia, susceptibility to} (3).
VDRC has 1 RNAi stocks for FBgn0034094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.20Down
Head95 54 of 4 4.20Up
Eye109 124 of 4 4.75Up
Thoracicoabdominal ganglion7 01 of 4 0.30Down
Salivary gland13 41 of 4 0.59None
Crop208 94 of 4 9.10Up
Midgut7 10 of 4 0.30Down
Tubule12 13 of 4 0.50Down
Hindgut128 64 of 4 5.60Up
Heart396 284 of 417.23Up
Fat body99 84 of 4 4.33Up
Ovary4 10 of 4 0.20Down
Testis22 24 of 4 1.00None
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca58 34 of 4 2.54Up
Mated spermatheca117 144 of 4 5.10Up
Adult carcass95 64 of 4 4.10Up
Larval CNS5 02 of 4 0.24Down
Larval Salivary gland27 34 of 4 1.21None
Larval midgut15 10 of 4 0.66None
Larval tubule16 24 of 4 0.70None
Larval hindgut166 74 of 4 7.24Up
Larval fat body114 124 of 4 5.00Up
Larval trachea267 354 of 411.61Up
Larval carcass100 64 of 4 4.37Up
S2 cells (growing)86 44 of 4 3.76Up
Whole fly23 34 of 4

Looking for CG3666-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime