FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3668-RA through 18771 annotations produced 1 hits

forkhead domain 59A (fd59A):

Annotation Number : CG3668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004896
Gbrowse : chr2R:18754043-18758229 (+) // 100.0 //
Probeset : 1625779_at
Accessions : protein= NP_523814;, nucleotide= NM_079090;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0004896.
Homophila reports that CG3668 is a close match (1e-11) to human gene CAGH44;FOXP2;SPCH1;TNRC10 (NP_683696), a gene associated with Speech-language disorder-1, 602081 (3).
BioGrid reports that CG3668 interacts with CG3731 CG3929 CG3971 CG4328 CG5814 CG6322 CG6337 CG6755 CG7001 CG7010 CG7399 CG7619 CG8642 CG8947 CG9745 .
TRiP has 1 RNAi stocks for FBgn0004896 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004896 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	186 ± 4	4 of 4	32.30	Up
Head	38 ± 1	4 of 4	6.60	Up
Eye	10 ± 2	3 of 4	1.84	None
Thoracicoabdominal ganglion	15 ± 2	4 of 4	2.60	Up
Salivary gland	4 ± 2	0 of 4	0.74	None
Crop	3 ± 1	0 of 4	0.50	None
Midgut	1 ± 0	0 of 4	0.30	Down
Tubule	4 ± 0	0 of 4	0.80	Down
Hindgut	2 ± 0	0 of 4	0.40	Down
Heart	2 ± 0	0 of 4	0.45	Down
Fat body	2 ± 1	0 of 4	0.34	Down
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.30	Down
Male accessory glands	2 ± 0	0 of 4	0.40	Down
Virgin spermatheca	0 ± 0	0 of 4	0.16	Down
Mated spermatheca	3 ± 1	0 of 4	0.61	None
Adult carcass	4 ± 1	0 of 4	0.70	None
Larval CNS	179 ± 22	4 of 4	31.13	Up
Larval Salivary gland	1 ± 0	0 of 4	0.31	Down
Larval midgut	3 ± 1	0 of 4	0.60	None
Larval tubule	0 ± 0	0 of 4	0.10	Down
Larval hindgut	0 ± 0	0 of 4	0.06	Down
Larval fat body	6 ± 0	0 of 4	1.10	None
Larval trachea	2 ± 1	0 of 4	0.35	Down
Larval carcass	3 ± 1	1 of 4	0.67	None
S2 cells (growing)	2 ± 0	0 of 4	0.49	Down
Whole fly	5 ± 0	2 of 4

Looking for CG3668-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720