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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3675-RA through 18771 annotations produced 1 hits



Arginine methyltransferase 2 (Art2):

Annotation Number : CG3675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031592
Gbrowse : chr2L:4278038-4279290 (-) // 100.0 //
Probeset : 1639915_at
Accessions : protein= NP_608821;, nucleotide= NM_134977;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0031592.
BioGrid reports that CG3675 interacts with CG9927 .
VDRC has 3 RNAi stocks for FBgn0031592 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 14 of 4 1.40None
Head3 10 of 4 0.40None
Eye2 10 of 4 0.37Down
Thoracicoabdominal ganglion11 31 of 4 1.40None
Salivary gland3 10 of 4 0.50None
Crop2 00 of 4 0.30Down
Midgut2 00 of 4 0.30Down
Tubule3 00 of 4 0.50Down
Hindgut2 00 of 4 0.30Down
Heart1 00 of 4 0.24Down
Fat body6 50 of 4 0.77None
Ovary4 11 of 4 0.60None
Testis63 34 of 4 8.20Up
Male accessory glands5 20 of 4 0.70None
Virgin spermatheca2 00 of 4 0.25Down
Mated spermatheca4 10 of 4 0.53None
Adult carcass2 00 of 4 0.30Down
Larval CNS4 20 of 4 0.61None
Larval Salivary gland1 00 of 4 0.23Down
Larval midgut3 10 of 4 0.41None
Larval tubule2 00 of 4 0.30Down
Larval hindgut3 00 of 4 0.41Down
Larval fat body8 31 of 4 1.10None
Larval trachea2 10 of 4 0.28Down
Larval carcass5 10 of 4 0.66None
S2 cells (growing)2 00 of 4 0.28Down
Whole fly7 13 of 4

Looking for CG3675-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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