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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3682-RB through 18771 annotations produced 2 hits



PIP5K59B (PIP5K59B):

Annotation Number : CG3682
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034789
Gbrowse : chr2R:18762312-18765413 (+) // 100.0 //
Probeset : 1639668_at
Accessions : protein= NP_001036566; /// NP_611729; /// NP_726262;, nucleotide= NM_001043101; /// NM_137885; /// NM_166567;
Interpro : 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosph
FlyMine data for FBgn0034789.
Homophila reports that CG3682 is a close match (8e-11) to human gene CFD;PIP5K3 (NP_055855), a gene associated with Corneal fleck dystrophy, 121850 (3).
VDRC has 3 RNAi stocks for FBgn0034789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 24 of 4 5.40Up
Head7 ± 11 of 4 1.60None
Eye3 ± 00 of 4 0.81None
Thoracicoabdominal ganglion21 ± 64 of 4 5.10None
Salivary gland14 ± 31 of 4 3.37None
Crop3 ± 00 of 4 0.70None
Midgut4 ± 00 of 4 1.10None
Tubule5 ± 00 of 4 1.20None
Hindgut4 ± 00 of 4 0.90None
Heart3 ± 00 of 4 0.86None
Fat body7 ± 11 of 4 1.80None
Ovary2 ± 00 of 4 0.60None
Testis2 ± 00 of 4 0.50None
Male accessory glands4 ± 21 of 4 1.10None
Virgin spermatheca4 ± 00 of 4 0.97None
Mated spermatheca7 ± 12 of 4 1.71None
Adult carcass4 ± 00 of 4 1.10None
Larval CNS8 ± 14 of 4 2.04Up
Larval Salivary gland1 ± 00 of 4 0.37None
Larval midgut5 ± 10 of 4 1.26None
Larval tubule5 ± 20 of 4 1.20None
Larval hindgut4 ± 00 of 4 0.92None
Larval fat body5 ± 11 of 4 1.20None
Larval trachea3 ± 10 of 4 0.79None
Larval carcass5 ± 11 of 4 1.39None
S2 cells (growing)3 ± 01 of 4 0.71None
Whole fly4 ± 11 of 4



PIP5K59B (PIP5K59B):

Annotation Number : CG3682
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034789
Gbrowse : chr2R:18762312-18765413 (+) // 100.0 //
Probeset : 1622913_a_at
Accessions : protein= NP_001036566; /// NP_611729; /// NP_726262;, nucleotide= NM_001043101; /// NM_137885; /// NM_166567;
Interpro : 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosph
FlyMine data for FBgn0034789.
Homophila reports that CG3682 is a close match (8e-11) to human gene CFD;PIP5K3 (NP_055855), a gene associated with Corneal fleck dystrophy, 121850 (3).
VDRC has 3 RNAi stocks for FBgn0034789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 24 of 413.20Up
Head24 ± 53 of 4 3.70None
Eye8 ± 10 of 4 1.22None
Thoracicoabdominal ganglion54 ± 94 of 4 8.30Up
Salivary gland6 ± 10 of 4 0.99None
Crop5 ± 20 of 4 0.80None
Midgut14 ± 10 of 4 2.20Up
Tubule4 ± 10 of 4 0.60Down
Hindgut3 ± 00 of 4 0.50Down
Heart1 ± 00 of 4 0.23Down
Fat body1 ± 00 of 4 0.28Down
Ovary5 ± 10 of 4 0.80None
Testis1 ± 00 of 4 0.30Down
Male accessory glands7 ± 20 of 4 1.10None
Virgin spermatheca3 ± 00 of 4 0.46Down
Mated spermatheca5 ± 20 of 4 0.87None
Adult carcass5 ± 30 of 4 0.80None
Larval CNS21 ± 24 of 4 3.31Up
Larval Salivary gland5 ± 10 of 4 0.80None
Larval midgut9 ± 20 of 4 1.49None
Larval tubule2 ± 00 of 4 0.30Down
Larval hindgut2 ± 10 of 4 0.42None
Larval fat body1 ± 00 of 4 0.20Down
Larval trachea4 ± 31 of 4 0.73None
Larval carcass6 ± 20 of 4 1.02None
S2 cells (growing)3 ± 00 of 4 0.51Down
Whole fly6 ± 10 of 4

Looking for CG3682-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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