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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3688-RA through 18771 annotations produced 1 hits



lethal 9 in the black-reduced region (l(2)35Bd):

Annotation Number : CG3688
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001974
Gbrowse : chr2L:15009940-15011772 (+) // 100.0 //
Probeset : 1628957_at
Accessions : protein= NP_523568;, nucleotide= NM_078844;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from el
FlyMine data for FBgn0001974.
BioGrid reports that CG3688 interacts with CG5469 .
VDRC has 1 RNAi stocks for FBgn0001974 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 54 of 4 0.60Down
Head43 34 of 4 0.30Down
Eye77 34 of 4 0.62Down
Thoracicoabdominal ganglion67 14 of 4 0.50Down
Salivary gland71 94 of 4 0.57Down
Crop55 34 of 4 0.40Down
Midgut33 14 of 4 0.30Down
Tubule48 14 of 4 0.40Down
Hindgut40 14 of 4 0.30Down
Heart66 34 of 4 0.53Down
Fat body74 84 of 4 0.60Down
Ovary293 44 of 4 2.30Up
Testis135 74 of 4 1.10None
Male accessory glands48 104 of 4 0.40Down
Virgin spermatheca68 64 of 4 0.54Down
Mated spermatheca73 14 of 4 0.58Down
Adult carcass45 14 of 4 0.40Down
Larval CNS179 174 of 4 1.42Up
Larval Salivary gland146 44 of 4 1.16Up
Larval midgut63 24 of 4 0.51Down
Larval tubule102 44 of 4 0.80Down
Larval hindgut94 44 of 4 0.75Down
Larval fat body104 74 of 4 0.80None
Larval trachea87 74 of 4 0.69Down
Larval carcass120 44 of 4 0.96None
S2 cells (growing)132 34 of 4 1.06None
Whole fly125 24 of 4

Looking for CG3688-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime