FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3695-RA through 18771 annotations produced 1 hits

/// /// Mediator complex subunit 23 (CG3700 /// DmirCG3700 /// MED23):

Annotation Number : CG3695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034795 /// FBgn0034796
Gbrowse : chr2R:18776536-18781672 (+) // 100.0 //
Probeset : 1630272_at
Accessions : protein= NP_001137740; /// NP_001137741; /// NP_611735; /// NP_611736;, nucleotide= NM_001144268; /// NM_001144269; /// NM_137891; /// NM_137892;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034795 /// FBgn0034796.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	4 of 4	0.40	Down
Head	6 ± 2	0 of 4	0.30	Down
Eye	4 ± 2	0 of 4	0.20	Down
Thoracicoabdominal ganglion	8 ± 1	2 of 4	0.30	Down
Salivary gland	8 ± 2	0 of 4	0.35	Down
Crop	15 ± 1	1 of 4	0.70	Down
Midgut	11 ± 3	2 of 4	0.50	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	9 ± 1	0 of 4	0.40	Down
Heart	4 ± 1	0 of 4	0.20	Down
Fat body	5 ± 3	0 of 4	0.23	Down
Ovary	41 ± 0	4 of 4	1.80	Up
Testis	5 ± 1	2 of 4	0.20	Down
Male accessory glands	8 ± 2	0 of 4	0.40	Down
Virgin spermatheca	2 ± 1	0 of 4	0.09	Down
Mated spermatheca	4 ± 1	0 of 4	0.19	Down
Adult carcass	14 ± 1	0 of 4	0.60	Down
Larval CNS	36 ± 1	4 of 4	1.59	Up
Larval Salivary gland	18 ± 1	3 of 4	0.78	Down
Larval midgut	11 ± 1	0 of 4	0.51	Down
Larval tubule	20 ± 3	4 of 4	0.90	None
Larval hindgut	13 ± 1	4 of 4	0.58	Down
Larval fat body	8 ± 3	0 of 4	0.40	Down
Larval trachea	13 ± 2	3 of 4	0.58	Down
Larval carcass	11 ± 3	1 of 4	0.47	Down
S2 cells (growing)	47 ± 1	4 of 4	2.03	Up
Whole fly	23 ± 1	4 of 4

Looking for CG3695-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720