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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3700-RA through 18771 annotations produced 1 hits



/// /// Mediator complex subunit 23 (CG3700 /// DmirCG3700 /// MED23):

Annotation Number : CG3700
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034795 /// FBgn0034796
Gbrowse : chr2R:18781985-18783269 (+) // 100.0 //
Probeset : 1639489_at
Accessions : protein= NP_001137740; /// NP_001137741; /// NP_611735; /// NP_611736;, nucleotide= NM_001144268; /// NM_001144269; /// NM_137891; /// NM_137892;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034795 /// FBgn0034796.
Homophila reports that CG3700 is a close match (3e-11) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 24 of 4 1.00None
Head158 64 of 4 2.10Up
Eye123 94 of 4 1.64Up
Thoracicoabdominal ganglion67 24 of 4 0.90None
Salivary gland87 54 of 4 1.16None
Crop128 54 of 4 1.70Up
Midgut26 24 of 4 0.40Down
Tubule26 13 of 4 0.30Down
Hindgut64 34 of 4 0.90Down
Heart154 64 of 4 2.05Up
Fat body319 144 of 4 4.23Up
Ovary77 24 of 4 1.00None
Testis16 04 of 4 0.20Down
Male accessory glands40 14 of 4 0.50Down
Virgin spermatheca210 104 of 4 2.78Up
Mated spermatheca223 114 of 4 2.96Up
Adult carcass262 74 of 4 3.50Up
Larval CNS151 144 of 4 2.01Up
Larval Salivary gland80 84 of 4 1.07None
Larval midgut22 24 of 4 0.30Down
Larval tubule46 24 of 4 0.60Down
Larval hindgut53 44 of 4 0.70Down
Larval fat body146 114 of 4 1.90Up
Larval trachea87 154 of 4 1.16None
Larval carcass50 24 of 4 0.67Down
S2 cells (growing)112 24 of 4 1.49Up
Whole fly75 24 of 4

Looking for CG3700-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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