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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3703-RA through 18771 annotations produced 1 hits



(CG3703):

Annotation Number : CG3703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040348
Gbrowse : chrX:836498-839805 (-) // 100.0 //
Probeset : 1624554_at
Accessions : protein= NP_569874;, nucleotide= NM_130518;
FlyMine data for FBgn0040348.
BDGP gene expression has embryonic in situ data for EG:BACR7A4.15: 16 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0040348 available for purchase.
VDRC has 6 RNAi stocks for FBgn0040348 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain287 ± 154 of 420.00Up
Head98 ± 14 of 4 6.80Up
Eye168 ± 84 of 411.65Up
Thoracicoabdominal ganglion373 ± 94 of 425.90Up
Salivary gland2 ± 00 of 4 0.17Down
Crop3 ± 10 of 4 0.20Down
Midgut8 ± 30 of 4 0.60None
Tubule44 ± 94 of 4 3.10Up
Hindgut2 ± 10 of 4 0.20Down
Heart19 ± 34 of 4 1.34None
Fat body3 ± 30 of 4 0.26Down
Ovary3 ± 10 of 4 0.20Down
Testis12 ± 01 of 4 0.90None
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca5 ± 10 of 4 0.36Down
Mated spermatheca3 ± 00 of 4 0.24Down
Adult carcass11 ± 30 of 4 0.80None
Larval CNS113 ± 54 of 4 7.85Up
Larval Salivary gland7 ± 30 of 4 0.49None
Larval midgut1 ± 00 of 4 0.13Down
Larval tubule17 ± 22 of 4 1.20None
Larval hindgut1 ± 00 of 4 0.07Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea3 ± 20 of 4 0.26Down
Larval carcass8 ± 20 of 4 0.61None
S2 cells (growing)35 ± 24 of 4 2.46Up
Whole fly14 ± 11 of 4

Looking for CG3703-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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