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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3705-RA through 18771 annotations produced 1 hits



astray (aay):

Annotation Number : CG3705
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023129
Gbrowse : chr3L:9416352-9417904 (+) // 100.0 //
Probeset : 1633488_at
Accessions : protein= NP_524001;, nucleotide= NM_079277;
Interpro : 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0003824 // catalytic activity //
FlyMine data for FBgn0023129.
BDGP gene expression has embryonic in situ data for aay: 47 pix of staining in 20 body parts.
Homophila reports that CG3705 is a close match (2e-57) to human gene PSP (NP_004568), a gene associated with Phosphoserine phosphatase deficiency (3).
BioGrid reports that CG3705 interacts with CG6945 CG9720 .
TRiP has 2 RNAi stocks for FBgn0023129 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023129 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain426 ± 134 of 4 0.90None
Head1282 ± 734 of 4 2.60Up
Eye1129 ± 894 of 4 2.30Up
Thoracicoabdominal ganglion484 ± 94 of 4 1.00None
Salivary gland1036 ± 144 of 4 2.11Up
Crop735 ± 374 of 4 1.50Up
Midgut251 ± 124 of 4 0.50Down
Tubule792 ± 1044 of 4 1.60Up
Hindgut830 ± 224 of 4 1.70Up
Heart995 ± 1124 of 4 2.03Up
Fat body2253 ± 2104 of 4 4.59Up
Ovary411 ± 74 of 4 0.80None
Testis131 ± 34 of 4 0.30Down
Male accessory glands489 ± 304 of 4 1.00None
Virgin spermatheca1878 ± 1744 of 4 3.82Up
Mated spermatheca1448 ± 2434 of 4 2.95Up
Adult carcass819 ± 204 of 4 1.70Up
Larval CNS241 ± 434 of 4 0.49Down
Larval Salivary gland198 ± 164 of 4 0.40Down
Larval midgut468 ± 474 of 4 0.95None
Larval tubule577 ± 414 of 4 1.20None
Larval hindgut195 ± 104 of 4 0.40Down
Larval fat body733 ± 264 of 4 1.50Up
Larval trachea56 ± 164 of 4 0.11Down
Larval carcass231 ± 204 of 4 0.47Down
S2 cells (growing)40 ± 24 of 4 0.08Down
Whole fly491 ± 614 of 4

Looking for CG3705-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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