FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3708-RA through 18771 annotations produced 1 hits

(CG3708):

Annotation Number : CG3708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040345
Gbrowse : chrX:822824-824886 (-) // 100.0 //
Probeset : 1623554_at
Accessions : protein= NP_569871;, nucleotide= NM_130515;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from sequenc
FlyMine data for FBgn0040345.
BDGP gene expression has embryonic in situ data for EG:BACR7A4.18: 4 pix of staining in 1 body parts.
BioGrid reports that CG3708 interacts with CG7381 CG9930 CG9768 .
VDRC has 1 RNAi stocks for FBgn0040345 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.10	Down
Head	5 ± 0	1 of 4	0.20	Down
Eye	4 ± 1	0 of 4	0.16	Down
Thoracicoabdominal ganglion	6 ± 1	1 of 4	0.30	Down
Salivary gland	20 ± 3	2 of 4	0.81	None
Crop	4 ± 2	1 of 4	0.20	Down
Midgut	11 ± 1	1 of 4	0.50	Down
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	2 ± 1	0 of 4	0.10	Down
Heart	3 ± 0	0 of 4	0.15	Down
Fat body	9 ± 3	0 of 4	0.39	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	365 ± 22	4 of 4	14.80	Up
Male accessory glands	10 ± 1	0 of 4	0.40	Down
Virgin spermatheca	7 ± 1	0 of 4	0.30	Down
Mated spermatheca	6 ± 2	2 of 4	0.26	Down
Adult carcass	6 ± 2	0 of 4	0.30	Down
Larval CNS	3 ± 0	1 of 4	0.14	Down
Larval Salivary gland	6 ± 1	0 of 4	0.25	Down
Larval midgut	9 ± 1	0 of 4	0.36	Down
Larval tubule	6 ± 2	1 of 4	0.30	Down
Larval hindgut	2 ± 0	0 of 4	0.10	Down
Larval fat body	30 ± 11	2 of 4	1.20	None
Larval trachea	5 ± 0	0 of 4	0.20	Down
Larval carcass	7 ± 0	2 of 4	0.30	Down
S2 cells (growing)	4 ± 0	0 of 4	0.18	Down
Whole fly	24 ± 3	4 of 4

Looking for CG3708-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720