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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3709-RA through 18771 annotations produced 1 hits



(CG3709):

Annotation Number : CG3709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031227
Gbrowse : chr2L:153538-155321 (-) // 99.77 //
Probeset : 1638095_at
Accessions : protein= NP_608500;, nucleotide= NM_134656;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred
FlyMine data for FBgn0031227.
BDGP gene expression has embryonic in situ data for CG3709: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031227 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 34 of 4 0.50Down
Head29 ± 14 of 4 0.40Down
Eye27 ± 24 of 4 0.39Down
Thoracicoabdominal ganglion34 ± 04 of 4 0.50Down
Salivary gland32 ± 52 of 4 0.45Down
Crop32 ± 24 of 4 0.50Down
Midgut31 ± 14 of 4 0.40Down
Tubule26 ± 34 of 4 0.40Down
Hindgut28 ± 14 of 4 0.40Down
Heart25 ± 24 of 4 0.35Down
Fat body40 ± 64 of 4 0.57Down
Ovary162 ± 34 of 4 2.30Up
Testis46 ± 14 of 4 0.70Down
Male accessory glands110 ± 44 of 4 1.50Up
Virgin spermatheca38 ± 34 of 4 0.53Down
Mated spermatheca61 ± 14 of 4 0.86None
Adult carcass26 ± 23 of 4 0.40Down
Larval CNS83 ± 24 of 4 1.17Up
Larval Salivary gland72 ± 54 of 4 1.02None
Larval midgut30 ± 33 of 4 0.42Down
Larval tubule14 ± 13 of 4 0.20Down
Larval hindgut44 ± 34 of 4 0.62Down
Larval fat body22 ± 22 of 4 0.30Down
Larval trachea64 ± 94 of 4 0.91None
Larval carcass64 ± 114 of 4 0.91None
S2 cells (growing)65 ± 24 of 4 0.92None
Whole fly71 ± 34 of 4

Looking for CG3709-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime