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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3710-RA through 18771 annotations produced 1 hits



lethal(2)35Cf (TfIIS):

Annotation Number : CG3710
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010422
Gbrowse : chr2L:15058918-15060753 (-) // 100.0 //
Probeset : 1633430_at
Accessions : protein= NP_476967;, nucleotide= NM_057619;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0010422.
BDGP gene expression has embryonic in situ data for TfIIS: 26 pix of staining in 11 body parts.
BioGrid reports that CG3710 interacts with CG7347 .
TRiP has 2 RNAi stocks for FBgn0010422 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 34 of 4 1.10None
Head85 74 of 4 0.90None
Eye227 364 of 4 2.32Up
Thoracicoabdominal ganglion104 44 of 4 1.10None
Salivary gland94 74 of 4 0.97None
Crop95 24 of 4 1.00None
Midgut72 24 of 4 0.70Down
Tubule84 24 of 4 0.90Down
Hindgut72 34 of 4 0.70Down
Heart67 24 of 4 0.69Down
Fat body60 74 of 4 0.62Down
Ovary321 124 of 4 3.30Up
Testis101 64 of 4 1.00None
Male accessory glands139 34 of 4 1.40Up
Virgin spermatheca87 34 of 4 0.89None
Mated spermatheca94 34 of 4 0.97None
Adult carcass67 54 of 4 0.70Down
Larval CNS339 154 of 4 3.47Up
Larval Salivary gland118 74 of 4 1.21None
Larval midgut82 44 of 4 0.84None
Larval tubule97 44 of 4 1.00None
Larval hindgut86 44 of 4 0.88None
Larval fat body110 34 of 4 1.10None
Larval trachea129 84 of 4 1.33Up
Larval carcass98 54 of 4 1.01None
S2 cells (growing)82 04 of 4 0.84None
Whole fly97 54 of 4

Looking for CG3710-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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