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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3711-RA through 18771 annotations produced 1 hits



(CG3711):

Annotation Number : CG3711
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040344
Gbrowse : chrX:817199-821596 (-) // 100.0 //
Probeset : 1623320_at
Accessions : protein= NP_001033819; /// NP_569869;, nucleotide= NM_001038730; /// NM_130513;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0040344.
TRiP has 1 RNAi stocks for FBgn0040344 available for purchase.
VDRC has 4 RNAi stocks for FBgn0040344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain432 84 of 4 5.20Up
Head165 104 of 4 2.00Up
Eye113 74 of 4 1.38Up
Thoracicoabdominal ganglion417 274 of 4 5.10Up
Salivary gland214 64 of 4 2.60Up
Crop100 44 of 4 1.20None
Midgut51 54 of 4 0.60Down
Tubule40 24 of 4 0.50Down
Hindgut66 34 of 4 0.80None
Heart44 54 of 4 0.54Down
Fat body39 24 of 4 0.47Down
Ovary159 24 of 4 1.90Up
Testis35 34 of 4 0.40Down
Male accessory glands129 64 of 4 1.60Up
Virgin spermatheca56 24 of 4 0.68Down
Mated spermatheca61 34 of 4 0.74Down
Adult carcass55 34 of 4 0.70Down
Larval CNS176 134 of 4 2.13Up
Larval Salivary gland160 84 of 4 1.95Up
Larval midgut48 34 of 4 0.59Down
Larval tubule53 24 of 4 0.60Down
Larval hindgut79 44 of 4 0.96None
Larval fat body53 64 of 4 0.60Down
Larval trachea127 34 of 4 1.55Up
Larval carcass67 34 of 4 0.82None
S2 cells (growing)111 14 of 4 1.35Up
Whole fly82 54 of 4

Looking for CG3711-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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