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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3715-RA through 18771 annotations produced 1 hits

SHC-adaptor protein (Shc):

Annotation Number : CG3715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015296
Gbrowse : chr3L:9420099-9421779 (+) // 100.0 //
Probeset : 1623967_at
Accessions : protein= NP_524683;, nucleotide= NM_079944;
Pathway : open tracheal system // inferred from mutant phenotype /// 0008293 // torso signaling pathway // inferred from genetic
FlyMine data for FBgn0015296.
BDGP gene expression has embryonic in situ data for Shc: 4 pix of staining in 1 body parts.
BioGrid reports that CG3715 interacts with CG5502 CG10079 CG1389 .
VDRC has 2 RNAi stocks for FBgn0015296 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 44 of 4 1.20Up
Head81 14 of 4 0.70Down
Eye116 44 of 4 0.98None
Thoracicoabdominal ganglion106 54 of 4 0.90None
Salivary gland100 44 of 4 0.85Down
Crop165 54 of 4 1.40Up
Midgut93 74 of 4 0.80Down
Tubule104 34 of 4 0.90Down
Hindgut113 24 of 4 1.00None
Heart130 64 of 4 1.10None
Fat body52 64 of 4 0.44Down
Ovary211 44 of 4 1.80Up
Testis138 44 of 4 1.20Up
Male accessory glands74 64 of 4 0.60Down
Virgin spermatheca51 34 of 4 0.44Down
Mated spermatheca56 14 of 4 0.48Down
Adult carcass82 84 of 4 0.70Down
Larval CNS290 114 of 4 2.45Up
Larval Salivary gland98 54 of 4 0.83Down
Larval midgut126 64 of 4 1.07None
Larval tubule162 54 of 4 1.40Up
Larval hindgut144 64 of 4 1.22Up
Larval fat body123 74 of 4 1.00None
Larval trachea232 164 of 4 1.96Up
Larval carcass117 84 of 4 0.99None
S2 cells (growing)567 134 of 4 4.78Up
Whole fly118 34 of 4

Looking for CG3715-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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