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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3722-RA through 18771 annotations produced 1 hits



DE-Cadherin (shg):

Annotation Number : CG3722
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003391
Gbrowse : chr2R:16938106-16944664 (-) // 100.0 //
Probeset : 1639613_at
Accessions : protein= NP_476722;, nucleotide= NM_057374;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035147 // branch fusion
Interpro : open tracheal system // traceable author statement /// 0035160 // maintenance of epithelial integrity
FlyMine data for FBgn0003391.
BDGP gene expression has embryonic in situ data for shg: 25 pix of staining in 64 body parts.
Homophila reports that CG3722 is a close match (8e-11) to human gene CDH1;ECAD;LCAM;UVO (NP_004351), a gene associated with Breast cancer, lobular (3);Cleft lip with or without cleft palate, with gastric cancer, familial diffuse (3);Endometrial carcinoma (3);Gastric cancer, familial diffuse, 137215 (3);Ovarian carcinoma (3);{Listeria monocytogenes, susceptibility to} (3).
BioGrid reports that CG3722 interacts with CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG6671 CG6671 CG3936 CG11387 CG5695 CG15319 CG17484 CG1004 .
TRiP has 4 RNAi stocks for FBgn0003391 available for purchase.
VDRC has 4 RNAi stocks for FBgn0003391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 02 of 4 0.30Down
Head24 ± 24 of 4 0.80None
Eye57 ± 64 of 4 1.93Up
Thoracicoabdominal ganglion7 ± 10 of 4 0.30Down
Salivary gland32 ± 43 of 4 1.10None
Crop26 ± 14 of 4 0.90None
Midgut32 ± 14 of 4 1.10None
Tubule11 ± 11 of 4 0.40Down
Hindgut30 ± 14 of 4 1.00None
Heart6 ± 01 of 4 0.22Down
Fat body12 ± 51 of 4 0.43Down
Ovary44 ± 24 of 4 1.50Up
Testis24 ± 04 of 4 0.80None
Male accessory glands18 ± 12 of 4 0.60Down
Virgin spermatheca5 ± 10 of 4 0.18Down
Mated spermatheca10 ± 20 of 4 0.36Down
Adult carcass20 ± 23 of 4 0.70Down
Larval CNS43 ± 44 of 4 1.48Up
Larval Salivary gland26 ± 24 of 4 0.89None
Larval midgut24 ± 23 of 4 0.83None
Larval tubule31 ± 14 of 4 1.10None
Larval hindgut31 ± 14 of 4 1.08None
Larval fat body23 ± 34 of 4 0.80None
Larval trachea46 ± 54 of 4 1.56Up
Larval carcass29 ± 43 of 4 0.99None
S2 cells (growing)18 ± 13 of 4 0.62Down
Whole fly29 ± 24 of 4

Looking for CG3722-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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