Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3727-RA through 18771 annotations produced 1 hits



dreadlocks (dock):

Annotation Number : CG3727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010583
Gbrowse : chr2L:825963-833245 (+) // 100.0 //
Probeset : 1624864_s_at
Accessions : protein= NP_476976; /// NP_722657; /// NP_722658;, nucleotide= NM_057628; /// NM_164389; /// NM_164390;
Pathway : 0005737 // cytoplasm // non-traceable author statement
Interpro : 0005070 // SH3/SH2 adaptor activity // inferred from sequence or structural similarity /// 0005070 // SH3/SH2 adaptor ac
FlyMine data for FBgn0010583.
BDGP gene expression has embryonic in situ data for dock: 15 pix of staining in 13 body parts.
Homophila reports that CG3727 is a close match (4e-11) to human gene ABL1 (NP_009297), a gene associated with Leukemia, Philadelphia chromosome-positive, resistant to imatinib (3).
BioGrid reports that CG3727 interacts with CG6203 CG7291 CG9181 CG9282 CG9375 CG17800 CG5837 CG10295 CG16973 CG16973 CG16973 CG16973 CG16973 CG16973 CG18214 CG9181 CG9181 CG18402 CG18402 CG10295 CG10295 CG6757 CG14992 CG14992 CG3727 CG14992 .
TRiP has 1 RNAi stocks for FBgn0010583 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010583 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain384 ± 154 of 4 7.10Up
Head123 ± 14 of 4 2.30Up
Eye134 ± 84 of 4 2.49Up
Thoracicoabdominal ganglion345 ± 44 of 4 6.40Up
Salivary gland66 ± 44 of 4 1.24None
Crop66 ± 14 of 4 1.20Up
Midgut46 ± 34 of 4 0.90None
Tubule57 ± 14 of 4 1.10None
Hindgut58 ± 24 of 4 1.10None
Heart47 ± 44 of 4 0.89None
Fat body53 ± 64 of 4 0.99None
Ovary75 ± 34 of 4 1.40Up
Testis29 ± 24 of 4 0.60Down
Male accessory glands62 ± 54 of 4 1.20None
Virgin spermatheca50 ± 34 of 4 0.94None
Mated spermatheca45 ± 34 of 4 0.83None
Adult carcass46 ± 34 of 4 0.90None
Larval CNS756 ± 284 of 414.01Up
Larval Salivary gland73 ± 34 of 4 1.37Up
Larval midgut62 ± 24 of 4 1.16None
Larval tubule127 ± 94 of 4 2.40Up
Larval hindgut84 ± 54 of 4 1.57Up
Larval fat body185 ± 174 of 4 3.40Up
Larval trachea103 ± 64 of 4 1.92Up
Larval carcass93 ± 54 of 4 1.73Up
S2 cells (growing)220 ± 104 of 4 4.08Up
Whole fly54 ± 34 of 4

Looking for CG3727-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime