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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3730-RB through 18771 annotations produced 1 hits



Capsuleen (csul):

Annotation Number : CG3730
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015925
Gbrowse : chr2R:12152179-12154464 (+) // 100.0 //
Probeset : 1640862_a_at
Accessions : protein= NP_477184; /// NP_725552;, nucleotide= NM_057836; /// NM_166158;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 000
Interpro : 0008168 // methyltransferase activity // inferred from mutant phenotype /// 0008168 // methyltransferase activity // inf
FlyMine data for FBgn0015925.
VDRC has 3 RNAi stocks for FBgn0015925 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 24 of 4 0.30Down
Head39 ± 24 of 4 0.30Down
Eye45 ± 34 of 4 0.39Down
Thoracicoabdominal ganglion33 ± 14 of 4 0.30Down
Salivary gland27 ± 12 of 4 0.23Down
Crop54 ± 54 of 4 0.50Down
Midgut34 ± 24 of 4 0.30Down
Tubule485 ± 524 of 4 4.10Up
Hindgut47 ± 24 of 4 0.40Down
Heart42 ± 24 of 4 0.36Down
Fat body37 ± 84 of 4 0.32Down
Ovary284 ± 24 of 4 2.40Up
Testis26 ± 14 of 4 0.20Down
Male accessory glands68 ± 24 of 4 0.60Down
Virgin spermatheca41 ± 24 of 4 0.35Down
Mated spermatheca51 ± 24 of 4 0.43Down
Adult carcass34 ± 44 of 4 0.30Down
Larval CNS151 ± 84 of 4 1.27Up
Larval Salivary gland67 ± 54 of 4 0.57Down
Larval midgut30 ± 24 of 4 0.25Down
Larval tubule207 ± 144 of 4 1.70Up
Larval hindgut71 ± 44 of 4 0.60Down
Larval fat body34 ± 34 of 4 0.30Down
Larval trachea117 ± 174 of 4 0.98None
Larval carcass63 ± 64 of 4 0.53Down
S2 cells (growing)178 ± 84 of 4 1.50Up
Whole fly119 ± 44 of 4

Looking for CG3730-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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