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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3760-RB through 18771 annotations produced 1 hits



anon-fast-evolving-2C9 (CG3760):

Annotation Number : CG3760
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022343
Gbrowse : chr2R:20825861-20827295 (+) // 100.0 //
Probeset : 1631577_a_at
Accessions : protein= NP_611981; /// NP_726501;, nucleotide= NM_138137; /// NM_166700;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0022343.
BDGP gene expression has embryonic in situ data for CG3760: 4 pix of staining in 1 body parts.
BioGrid reports that CG3760 interacts with CG4810 .
VDRC has 1 RNAi stocks for FBgn0022343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain230 24 of 4 0.50Down
Head296 294 of 4 0.60Down
Eye197 84 of 4 0.41Down
Thoracicoabdominal ganglion228 74 of 4 0.50Down
Salivary gland518 214 of 4 1.07None
Crop390 104 of 4 0.80Down
Midgut455 164 of 4 0.90None
Tubule189 84 of 4 0.40Down
Hindgut324 114 of 4 0.70Down
Heart359 124 of 4 0.74Down
Fat body408 434 of 4 0.84None
Ovary798 214 of 4 1.60Up
Testis331 44 of 4 0.70Down
Male accessory glands945 234 of 4 1.90Up
Virgin spermatheca262 244 of 4 0.54Down
Mated spermatheca327 184 of 4 0.67Down
Adult carcass295 254 of 4 0.60Down
Larval CNS645 474 of 4 1.33Up
Larval Salivary gland1139 494 of 4 2.35Up
Larval midgut351 104 of 4 0.72Down
Larval tubule323 94 of 4 0.70Down
Larval hindgut435 214 of 4 0.90None
Larval fat body455 234 of 4 0.90None
Larval trachea890 1544 of 4 1.83Up
Larval carcass622 464 of 4 1.28None
S2 cells (growing)488 164 of 4 1.01None
Whole fly485 234 of 4

Looking for CG3760-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime