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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3772-RA through 18771 annotations produced 1 hits



chr3R:15037914-15041166 (+) // 100.0 // (cryptochrome):

Annotation Number : CG3772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1628719_at
Accessions : protein= , nucleotide= NP_732407;
Pathway : "0000060 // protein import into nucleus
Interpro : translocation // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 00
FlyMine data for full length.
BioGrid reports that CG3772 interacts with CG3620 CG3620 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain279 ± 154 of 4 1.60Up
Head575 ± 304 of 4 3.20Up
Eye745 ± 304 of 4 4.19Up
Thoracicoabdominal ganglion304 ± 114 of 4 1.70Up
Salivary gland1906 ± 354 of 410.70Up
Crop666 ± 134 of 4 3.70Up
Midgut267 ± 154 of 4 1.50Up
Tubule1972 ± 1194 of 411.10Up
Hindgut868 ± 204 of 4 4.90Up
Heart609 ± 154 of 4 3.42Up
Fat body872 ± 754 of 4 4.90Up
Ovary7 ± 11 of 4 0.00Down
Testis25 ± 34 of 4 0.10Down
Male accessory glands205 ± 74 of 4 1.20None
Virgin spermatheca1214 ± 234 of 4 6.81Up
Mated spermatheca1132 ± 474 of 4 6.36Up
Adult carcass656 ± 164 of 4 3.70Up
Larval CNS8 ± 30 of 4 0.05Down
Larval Salivary gland286 ± 464 of 4 1.61None
Larval midgut13 ± 10 of 4 0.08Down
Larval tubule41 ± 44 of 4 0.20Down
Larval hindgut6 ± 30 of 4 0.04Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea12 ± 180 of 4 0.07Down
Larval carcass4 ± 10 of 4 0.02Down
S2 cells (growing)3 ± 00 of 4 0.02Down
Whole fly178 ± 94 of 4

Looking for CG3772-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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