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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3774-RA through 18771 annotations produced 1 hits



ER GFP-fucose transporter (Efr):

Annotation Number : CG3774
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029849
Gbrowse : chrX:6113956-6116753 (+) // 100.0 //
Probeset : 1634675_s_at
Accessions : protein= NP_572299; /// NP_727071;, nucleotide= NM_132071; /// NM_167062;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence
Interpro : 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0029849.
VDRC has 2 RNAi stocks for FBgn0029849 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain239 114 of 4 1.40Up
Head294 164 of 4 1.70Up
Eye350 194 of 4 1.99Up
Thoracicoabdominal ganglion281 124 of 4 1.60Up
Salivary gland831 424 of 4 4.72Up
Crop393 164 of 4 2.20Up
Midgut302 114 of 4 1.70Up
Tubule556 94 of 4 3.20Up
Hindgut367 54 of 4 2.10Up
Heart318 214 of 4 1.81Up
Fat body297 144 of 4 1.69Up
Ovary247 54 of 4 1.40Up
Testis130 44 of 4 0.70None
Male accessory glands106 74 of 4 0.60Down
Virgin spermatheca313 64 of 4 1.78Up
Mated spermatheca252 94 of 4 1.43Up
Adult carcass294 214 of 4 1.70Up
Larval CNS154 314 of 4 0.88None
Larval Salivary gland234 84 of 4 1.33Up
Larval midgut199 74 of 4 1.13None
Larval tubule542 214 of 4 3.10Up
Larval hindgut244 204 of 4 1.38Up
Larval fat body89 114 of 4 0.50Down
Larval trachea311 324 of 4 1.77Up
Larval carcass242 384 of 4 1.37None
S2 cells (growing)438 104 of 4 2.49Up
Whole fly176 164 of 4

Looking for CG3774-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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