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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3779-RB through 18771 annotations produced 1 hits



Numb (numb):

Annotation Number : CG3779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002973
Gbrowse : chr2L:9437512-9463293 (+) // 100.0 //
Probeset : 1636815_a_at
Accessions : protein= NP_523523; /// NP_723460;, nucleotide= NM_078799; /// NM_164855;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // non-traceabl
FlyMine data for FBgn0002973.
BDGP gene expression has embryonic in situ data for numb: 41 pix of staining in 19 body parts.
BioGrid reports that CG3779 interacts with CG9398 CG8942 CG5940 CG5940 CG17697 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG2671 CG2671 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG10637 CG10637 CG3497 CG3497 CG1539 CG10637 CG10637 .
TRiP has 2 RNAi stocks for FBgn0002973 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 34 of 4 0.60None
Head243 224 of 4 0.90None
Eye253 84 of 4 0.93None
Thoracicoabdominal ganglion147 174 of 4 0.50None
Salivary gland262 54 of 4 0.96None
Crop297 264 of 4 1.10None
Midgut265 124 of 4 1.00None
Tubule1642 2334 of 4 6.00Up
Hindgut458 154 of 4 1.70Up
Heart134 154 of 4 0.49None
Fat body31 104 of 4 0.12Down
Ovary681 614 of 4 2.50Up
Testis78 44 of 4 0.30Down
Male accessory glands99 54 of 4 0.40Down
Virgin spermatheca55 44 of 4 0.20Down
Mated spermatheca72 124 of 4 0.26Down
Adult carcass81 34 of 4 0.30Down
Larval CNS428 244 of 4 1.57Up
Larval Salivary gland179 124 of 4 0.66None
Larval midgut215 34 of 4 0.79None
Larval tubule1299 1034 of 4 4.70Up
Larval hindgut496 514 of 4 1.81Up
Larval fat body19 14 of 4 0.10Down
Larval trachea506 414 of 4 1.85Up
Larval carcass402 314 of 4 1.47None
S2 cells (growing)107 24 of 4 0.39Down
Whole fly273 474 of 4

Looking for CG3779-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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