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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3780-RA through 18771 annotations produced 1 hits



Spliceosomal protein on the X (Spx):

Annotation Number : CG3780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015818
Gbrowse : chrX:6149865-6151629 (+) // 100.0 //
Probeset : 1640660_at
Accessions : protein= NP_511058;, nucleotide= NM_078503;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0007052 // mitotic spindle organization // infer
FlyMine data for FBgn0015818.
BioGrid reports that CG3780 interacts with CG33526 CG4550 CG4818 CG6033 CG7371 CG8229 CG8677 CG8947 CG9083 CG9127 .
VDRC has 3 RNAi stocks for FBgn0015818 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 44 of 4 0.60Down
Head72 24 of 4 0.50Down
Eye63 24 of 4 0.41Down
Thoracicoabdominal ganglion61 24 of 4 0.40Down
Salivary gland50 54 of 4 0.33Down
Crop97 54 of 4 0.60Down
Midgut51 14 of 4 0.30Down
Tubule71 24 of 4 0.50Down
Hindgut67 44 of 4 0.40Down
Heart51 24 of 4 0.34Down
Fat body104 154 of 4 0.68Down
Ovary380 104 of 4 2.50Up
Testis114 64 of 4 0.70Down
Male accessory glands167 144 of 4 1.10None
Virgin spermatheca122 34 of 4 0.80Down
Mated spermatheca131 44 of 4 0.86None
Adult carcass44 24 of 4 0.30Down
Larval CNS392 654 of 4 2.55Up
Larval Salivary gland193 74 of 4 1.26Up
Larval midgut74 34 of 4 0.48Down
Larval tubule67 44 of 4 0.40Down
Larval hindgut143 94 of 4 0.94None
Larval fat body92 104 of 4 0.60Down
Larval trachea175 254 of 4 1.14None
Larval carcass135 184 of 4 0.88None
S2 cells (growing)183 44 of 4 1.20Up
Whole fly153 94 of 4

Looking for CG3780-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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