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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3790-RA through 18771 annotations produced 1 hits



(CG3790):

Annotation Number : CG3790
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033778
Gbrowse : chr2R:8760288-8762518 (-) // 100.0 //
Probeset : 1624106_at
Accessions : protein= NP_610823;, nucleotide= NM_136979;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015226 // carnitine transporter activity //
FlyMine data for FBgn0033778.
Homophila reports that CG3790 is a close match (2e-26) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 2 RNAi stocks for FBgn0033778 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 24 of 421.60Up
Head181 34 of 431.10Up
Eye500 174 of 485.95Up
Thoracicoabdominal ganglion3 10 of 4 0.50None
Salivary gland5 20 of 4 0.93None
Crop4 20 of 4 0.70None
Midgut77 134 of 413.30Up
Tubule10 02 of 4 1.80Up
Hindgut5 10 of 4 0.90None
Heart1 00 of 4 0.22None
Fat body1 10 of 4 0.28None
Ovary1 00 of 4 0.20None
Testis3 00 of 4 0.70None
Male accessory glands6 30 of 4 1.10None
Virgin spermatheca4 10 of 4 0.79None
Mated spermatheca4 01 of 4 0.85None
Adult carcass6 20 of 4 1.20None
Larval CNS0 00 of 4 0.11Down
Larval Salivary gland5 10 of 4 0.97None
Larval midgut6 12 of 4 1.05None
Larval tubule2 00 of 4 0.40None
Larval hindgut4 01 of 4 0.76None
Larval fat body3 10 of 4 0.70None
Larval trachea10 111 of 4 1.87None
Larval carcass0 00 of 4 0.11Down
S2 cells (growing)2 00 of 4 0.45None
Whole fly5 11 of 4

Looking for CG3790-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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