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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3792-RA through 18771 annotations produced 1 hits



(CG3792):

Annotation Number : CG3792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031662
Gbrowse : chr2L:4977323-4978568 (+) // 100.0 //
Probeset : 1632503_at
Accessions : protein= NP_608889;, nucleotide= NM_135045;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 00160
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031662.
BDGP gene expression has embryonic in situ data for CG3792: 17 pix of staining in 11 body parts.
Homophila reports that CG3792 is a close match (2e-47) to human gene CDGIF;MPDU1;SL15 (NP_004861), a gene associated with Congenital disorder of glycosylation, type If, 609180 (3).
BioGrid reports that CG3792 interacts with CG5705 CG5709 .
VDRC has 4 RNAi stocks for FBgn0031662 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 ± 104 of 4 1.50Up
Head210 ± 114 of 4 1.10None
Eye250 ± 94 of 4 1.35Up
Thoracicoabdominal ganglion342 ± 94 of 4 1.80Up
Salivary gland194 ± 34 of 4 1.04None
Crop202 ± 124 of 4 1.10None
Midgut133 ± 34 of 4 0.70Down
Tubule435 ± 234 of 4 2.30Up
Hindgut217 ± 84 of 4 1.20None
Heart311 ± 94 of 4 1.67Up
Fat body252 ± 264 of 4 1.35Up
Ovary231 ± 84 of 4 1.20Up
Testis107 ± 104 of 4 0.60Down
Male accessory glands421 ± 104 of 4 2.30Up
Virgin spermatheca177 ± 64 of 4 0.95None
Mated spermatheca218 ± 174 of 4 1.17None
Adult carcass239 ± 64 of 4 1.30Up
Larval CNS338 ± 194 of 4 1.82Up
Larval Salivary gland377 ± 314 of 4 2.02Up
Larval midgut715 ± 554 of 4 3.84Up
Larval tubule211 ± 74 of 4 1.10None
Larval hindgut217 ± 94 of 4 1.17None
Larval fat body213 ± 134 of 4 1.10None
Larval trachea347 ± 524 of 4 1.87Up
Larval carcass271 ± 144 of 4 1.46Up
S2 cells (growing)589 ± 84 of 4 3.16Up
Whole fly186 ± 104 of 4

Looking for CG3792-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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