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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3793-RA through 18771 annotations produced 1 hits


Annotation Number : CG3793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028507
Gbrowse : chr2L:15764229-15766123 (+) // 99.68 //
Probeset : 1627114_at
Accessions : protein= NP_609766;, nucleotide= NM_135922;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation
FlyMine data for FBgn0028507.
BDGP gene expression has embryonic in situ data for BG:DS09217.4: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0028507 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain297 154 of 4 2.00Up
Head138 24 of 4 0.90None
Eye254 84 of 4 1.73Up
Thoracicoabdominal ganglion460 74 of 4 3.10Up
Salivary gland137 94 of 4 0.93None
Crop124 24 of 4 0.80Down
Midgut121 24 of 4 0.80Down
Tubule153 84 of 4 1.00None
Hindgut153 44 of 4 1.00None
Heart168 124 of 4 1.14None
Fat body122 264 of 4 0.83None
Ovary240 84 of 4 1.60Up
Testis56 24 of 4 0.40Down
Male accessory glands139 94 of 4 0.90None
Virgin spermatheca116 84 of 4 0.79Down
Mated spermatheca112 44 of 4 0.76Down
Adult carcass84 24 of 4 0.60Down
Larval CNS331 224 of 4 2.24Up
Larval Salivary gland252 104 of 4 1.71Up
Larval midgut134 34 of 4 0.91Down
Larval tubule241 44 of 4 1.60Up
Larval hindgut164 24 of 4 1.11Up
Larval fat body137 54 of 4 0.90None
Larval trachea224 204 of 4 1.52Up
Larval carcass124 44 of 4 0.85Down
S2 cells (growing)191 44 of 4 1.30Up
Whole fly147 44 of 4

Looking for CG3793-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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